View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_27 (Length: 499)
Name: NF4125_low_27
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 32558033 - 32557550
Alignment:
| Q |
1 |
tccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32558033 |
tccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgt |
32557934 |
T |
|
| Q |
101 |
gctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacccgacnnnnnnnnnnnnnnnnnnn---ctcaaagtt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
32557933 |
gctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacctgaccaacaacaacaacaacaacaacctcaaagtt |
32557834 |
T |
|
| Q |
198 |
tttacgacctttcttttgttcttcaacctgaaccggttcctattcaacaaaacccggggttgtctatcgacccggtttcaatcataacttcctctgggag |
297 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557833 |
tttacgacctttcttttgttcttcaacctgaacccgttcctattcaacaaaacccggggttgtctatcgacccggtttcaatcataacttcctctgggag |
32557734 |
T |
|
| Q |
298 |
ttacggttacggtgagggaaatgataataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggctagtattaataacatt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32557733 |
ttacggttacggtgagggaaatgataataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggctggtattaataacatt |
32557634 |
T |
|
| Q |
398 |
aataacaatggaaattcctattttaacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttat |
481 |
Q |
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| T |
32557633 |
aataataatggaaattcctattttaacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttat |
32557550 |
T |
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Back To:
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6507733 - 6507659
Alignment:
| Q |
1 |
tccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagc |
75 |
Q |
| |
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|||| |||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||| ||||| || ||||| |
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| T |
6507733 |
tcctgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagc |
6507659 |
T |
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