View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_30 (Length: 472)
Name: NF4125_low_30
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 37862041 - 37861595
Alignment:
| Q |
19 |
aattcaacattatctcatggtcatagagaaaaggggtgagctaaaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaactaaatat |
118 |
Q |
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| T |
37862041 |
aattcaacattatctcatggtcatagagaaaaagggtgagctagaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaactaaatat |
37861942 |
T |
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| Q |
119 |
ggaacagttgaaacatttgaagagttaacatgttcatttagaaactatggtcactacaaaagtccaagaatactcaa-tgtggaaattctgtatcgatga |
217 |
Q |
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| T |
37861941 |
ggaacagttgaaacatttgaagagttaacatgtttatttagaaactatggtcactaaaaaagtccaagaatactcaaatgtggaaattctgtatcgatga |
37861842 |
T |
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| Q |
218 |
atgcacaaatgtggcgatttttaccattaatcgctacagcattgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctagagcac |
317 |
Q |
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| T |
37861841 |
atgcacaaatgtggtgatttttaccattaatcgctacagcattgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctagagcac |
37861742 |
T |
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| Q |
318 |
aaggaaatatttatgacttgttccaataggtttgagagatttttagcattcatgaatatggatctattcattaaaaaggtttaatctaattctcaaactg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861741 |
aaggaaatatttatgacttgttccaataggtttgagagatttttagcattcatgaatatggatctattcattaaaaaggtttaatctaattctcaaactg |
37861642 |
T |
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| Q |
418 |
gtttgaagatggttgacaagggcgtccaagtaatgtgtccctatgct |
464 |
Q |
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| T |
37861641 |
gtttgaagatggttgacaagggcgtccaagtaatgtgtccctatgct |
37861595 |
T |
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