View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_31 (Length: 471)
Name: NF4125_low_31
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 37862329 - 37862794
Alignment:
| Q |
9 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
108 |
Q |
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| T |
37862329 |
agcagagaattcaatgacgcgattaacaatatgaaatgaaaggagtcaatcttgttgatacattccttatatctgaagattttatacattccttgtatct |
37862428 |
T |
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| Q |
109 |
gaagattttatcagataacagaaaatcaaagatttatatcatgcagtgataatagtgattaattataggcataggaaacatgtgaaaagtaatcaatgag |
208 |
Q |
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| T |
37862429 |
gaagattttatcagataacagaaaatcaaagatttatatcacgcagtgataatcgtgattaattataggcataggaaacatgtggaaagtaatcaatgag |
37862528 |
T |
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| Q |
209 |
gaacagaaatacaaagaaagaaagaatacatttgatt---------------------ttgggggaaaatagaatttgttgacttagtaagatgcgagga |
287 |
Q |
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| T |
37862529 |
gaacagaaatacaaagaaagaaagaatacatttgattttgggcgaaaaggtaaagagcttgggggaaaatagaatttgttgacttagtaagatgtgagga |
37862628 |
T |
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| Q |
288 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaag |
387 |
Q |
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| T |
37862629 |
tttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcgagtccctcgccggttgtggcaag |
37862728 |
T |
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| Q |
388 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
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| T |
37862729 |
tccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
37862794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 254 - 453
Target Start/End: Complemental strand, 39030988 - 39030789
Alignment:
| Q |
254 |
aaatagaatttgttgacttagtaagatgcgaggatttaggtggacacactacggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagca |
353 |
Q |
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| T |
39030988 |
aaatagaacttgttgccttggtaaaatgtgaggatttaggtggccacactatggagcacaacagtctcgacagtgagtccaggtccaaaacttaaaagca |
39030889 |
T |
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| Q |
354 |
caccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgatttcatcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
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| T |
39030888 |
cgccccattcaagtccttctcctgttgtgccaagtccttcttcttttgacttcctcctcatctcatccaaaatgaataacacggatggacttgacatgtt |
39030789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 453
Target Start/End: Original strand, 37858621 - 37858768
Alignment:
| Q |
306 |
ggagcacaacagtctcgattgtgagtccgggaccaaaaccgaaaagcacaccccattcaagtccctcgccggttgtggcaagtccgtcttcttttgattt |
405 |
Q |
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| T |
37858621 |
ggagcactacagtctcaacagtgagtccgggcccgaaaccaaataggacaccccattccagcccctcgcctgttgtggcaagtccgtcttcttttgactt |
37858720 |
T |
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| Q |
406 |
catcctcatctcatccaagatgaatagcacacacgcacttgacatgtt |
453 |
Q |
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| T |
37858721 |
cctcctcatctcatccaagatgaataacacacatgcacttgacatgtt |
37858768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 40421178 - 40421222
Alignment:
| Q |
410 |
ctcatctcatccaagatgaatagcacacacgcacttgacatgttt |
454 |
Q |
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| T |
40421178 |
ctcatctcatccaatataaatatcacacaagcacttgacatgttt |
40421222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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