View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_32 (Length: 467)

Name: NF4125_low_32
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_32
NF4125_low_32
[»] chr5 (3 HSPs)
chr5 (1-407)||(25493932-25494330)
chr5 (1-60)||(28225911-28225970)
chr5 (413-449)||(25493763-25493799)
[»] chr2 (3 HSPs)
chr2 (370-407)||(37899471-37899508)
chr2 (368-407)||(20143081-20143120)
chr2 (367-396)||(14131280-14131309)
[»] chr6 (2 HSPs)
chr6 (367-407)||(34713614-34713654)
chr6 (370-407)||(3855694-3855731)
[»] chr4 (1 HSPs)
chr4 (367-407)||(19663395-19663435)
[»] chr7 (1 HSPs)
chr7 (368-407)||(8123804-8123843)
[»] scaffold0194 (1 HSPs)
scaffold0194 (369-407)||(27066-27104)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 25494330 - 25493932
Alignment:
Q  1 agattgacacatgcttcataacttctacctcattcttgccaaaatctacactgaacctgaatattcataacaaaaaatgttagtattcccaaaaattgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25494330 agattgacacatgcttcataacttctacctcattcttgccaaaatctacactgaacctgaatattcataacaaaaaatgttagaattcccaaaaattgtc 25494231  T
Q  101 attttttgtcttaatcctttagttttatagaaaagagactctgataatccgaaatttgatcggacacaaataaagtttgcttaatcaaaattcaaactca 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25494230 attttttgtcttaatcctttagttttagagaaaagagactctgataatccgaaatttgatcggacacaaataaagtttgcttaaccaaaattcaaactca 25494131  T
Q  201 aatcctctcgattagttcgtccttaactgaaggtcaataatcacttgaacccaatagtaaatacaccatgattcgttattaactatctcatttcatgacc 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||    
T  25494130 aatcctctcgagtagttcgtccttaactgaaggtcaataatcacttgaacccaatattaaatacaccatg--------ttaactatctcatttcatgacc 25494039  T
Q  301 atacatcatcacatatttgactcctctaatgtaagtcaatttatataatcagttgagatattcgacaaagggaaatgatagatacagtgacaaaatgtat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  25494038 atacatcatcacatatttgactcctctaatgtaagtcaatttatataatcagttgagatattcgacaaaggaaaatgatagatacagtgacaacatgtat 25493939  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28225911 - 28225970
Alignment:
Q  1 agattgacacatgcttcataacttctacctcattcttgccaaaatctacactgaacctga 60  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28225911 agattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctga 28225970  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 25493799 - 25493763
Alignment:
Q  413 aatagcaacgctcttcgacaaaacatacatatttaac 449  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25493799 aatagcaatgctcttcgacaaaacatacatatttaac 25493763  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 37899471 - 37899508
Alignment:
Q  370 gggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37899471 gggaaatgatagatacagtgacaaaatgtatcaagaaa 37899508  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 20143120 - 20143081
Alignment:
Q  368 aagggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  20143120 aagggaaatgatagatacagtgacaaaatttatcaagaaa 20143081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 396
Target Start/End: Complemental strand, 14131309 - 14131280
Alignment:
Q  367 aaagggaaatgatagatacagtgacaaaat 396  Q
    ||||||||||||||||||||||||||||||    
T  14131309 aaagggaaatgatagatacagtgacaaaat 14131280  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 34713654 - 34713614
Alignment:
Q  367 aaagggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  34713654 aaagggaaatgatagatacagtgacaaaatttatcaagaaa 34713614  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 3855694 - 3855731
Alignment:
Q  370 gggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  3855694 gggaaatgatagatacagtgacaaaatttatcaagaaa 3855731  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 19663435 - 19663395
Alignment:
Q  367 aaagggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  19663435 aaagggaaatgatagatacagtgacaaaatttatcaagaaa 19663395  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 8123843 - 8123804
Alignment:
Q  368 aagggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  8123843 aagggaaatgatagatatagtaacaaaatgtatccagaaa 8123804  T

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Target: scaffold0194 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 27066 - 27104
Alignment:
Q  369 agggaaatgatagatacagtgacaaaatgtatccagaaa 407  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  27066 agggaaatgatagatacagtgacaaaatttatcaagaaa 27104  T

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