View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_33 (Length: 454)

Name: NF4125_low_33
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_33
NF4125_low_33
[»] chr3 (4 HSPs)
chr3 (73-443)||(11015854-11016224)
chr3 (79-443)||(11024866-11025226)
chr3 (233-443)||(11006291-11006501)
chr3 (272-408)||(47452271-47452407)
[»] chr4 (32 HSPs)
chr4 (272-392)||(7822547-7822667)
chr4 (272-426)||(7770982-7771136)
chr4 (275-377)||(7813061-7813163)
chr4 (275-379)||(7800218-7800322)
chr4 (272-407)||(7904610-7904745)
chr4 (272-426)||(7789667-7789821)
chr4 (278-402)||(45372427-45372551)
chr4 (274-374)||(48156825-48156925)
chr4 (276-442)||(48862823-48862992)
chr4 (253-408)||(48890968-48891123)
chr4 (276-374)||(48735713-48735811)
chr4 (272-401)||(7238091-7238220)
chr4 (274-402)||(48170956-48171087)
chr4 (275-375)||(45366618-45366718)
chr4 (257-407)||(7877283-7877433)
chr4 (273-376)||(7907904-7908007)
chr4 (273-379)||(7774222-7774328)
chr4 (271-443)||(33134152-33134327)
chr4 (276-407)||(48148047-48148181)
chr4 (253-390)||(48902509-48902646)
chr4 (273-375)||(49044626-49044728)
chr4 (305-401)||(7765232-7765328)
chr4 (275-379)||(48870123-48870227)
chr4 (275-379)||(48885809-48885913)
chr4 (275-375)||(48898303-48898403)
chr4 (273-408)||(50668622-50668757)
chr4 (312-374)||(47207552-47207614)
chr4 (319-408)||(37827358-37827447)
chr4 (318-375)||(49048996-49049053)
chr4 (272-408)||(49041502-49041638)
chr4 (272-408)||(50251172-50251308)
chr4 (335-394)||(50672161-50672220)
[»] chr8 (6 HSPs)
chr8 (284-404)||(12199897-12200017)
chr8 (284-404)||(12444325-12444445)
chr8 (278-402)||(4032286-4032410)
chr8 (309-435)||(15348477-15348603)
chr8 (285-392)||(12194892-12194999)
chr8 (285-392)||(12439320-12439427)
[»] chr6 (2 HSPs)
chr6 (273-375)||(21015355-21015457)
chr6 (272-426)||(21979990-21980144)
[»] scaffold0508 (1 HSPs)
scaffold0508 (310-408)||(11878-11976)
[»] chr5 (6 HSPs)
chr5 (310-440)||(29695768-29695898)
chr5 (312-375)||(29712866-29712929)
chr5 (312-408)||(29687669-29687765)
chr5 (313-374)||(178638-178699)
chr5 (305-374)||(1812036-1812105)
chr5 (312-375)||(42562728-42562791)
[»] chr1 (5 HSPs)
chr1 (310-392)||(24340030-24340112)
chr1 (313-408)||(24309796-24309891)
chr1 (274-371)||(24415417-24415514)
chr1 (318-374)||(24322086-24322142)
chr1 (274-392)||(24366735-24366853)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 73 - 443
Target Start/End: Complemental strand, 11016224 - 11015854
Alignment:
Q  73 ggcatagcaatacataatgttctttgattcatcgcattccatgtaggaaagagtattcaacaatgaacttgtgaagagtaccaaagaaggatcatcactt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11016224 ggcatagcaatacataatgttctttgattcatcgcattccatgtaggaaagagtattcaacaatgaacttgtgaagagtaccaaagaaggatcatcactt 11016125  T
Q  173 tatatatcaccatcatacaaattaaattagtaatccaagacgaagagaaacaaaacatcgattgcagaggaggaagacagatggagaagaagaccggcct 272  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11016124 tatatatcaccatcacacaaattaaattagtaatccaagacgaagagaaacaaaacatcgattgcagaggaggaagacagatggagaagaagaccggcct 11016025  T
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||| ||||||||    
T  11016024 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatc 11015925  T
Q  373 tctgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacactaatagaattgtgttcat 443  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11015924 tctgatcataactttgcaaaatcgcattttgaactttccactgcaacacacactaatagaattgtgttcat 11015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 79 - 443
Target Start/End: Complemental strand, 11025226 - 11024866
Alignment:
Q  79 gcaatacataatgttctttgattcatcgcattccatgtaggaaagagtattcaacaatgaacttgtgaagagtaccaaagaaggatcatcactttatata 178  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||    
T  11025226 gcaatatataatgttctttgactcatcgcattccatgtaggaa-gagtattgaacaatgaacttgtgaagagtaccaaagaaggattaatactttatata 11025128  T
Q  179 tcaccatcatacaaattaaattagtaatccaagacgaagagaaacaaaacatcgattgcagaggaggaagacagatggagaagaagaccggcctgtatct 278  Q
    |||||||   ||  |||||||||||||||||| ||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||| |    
T  11025127 tcaccat---acggattaaattagtaatccaaaacgaatagaaacaaaacaacaattgcataggaggaagacagatggagaagaagaccgacctgtattt 11025031  T
Q  279 gcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgat 378  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| ||||||||||||||    
T  11025030 gcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgat 11024931  T
Q  379 cataactttgcaaaatcgcattttgaactttgcactgcaacacacactaatagaattgtgttcat 443  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  11024930 cataactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcat 11024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 233 - 443
Target Start/End: Complemental strand, 11006501 - 11006291
Alignment:
Q  233 attgcagaggaggaagacagatggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttat 332  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||    
T  11006501 attgcagagaaggaagacagatggagacgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttat 11006402  T
Q  333 acgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacactaataga 432  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |||| ||||  ||||||||||||||||    
T  11006401 acgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgacctttccactagaacacacactaataga 11006302  T
Q  433 attgtgttcat 443  Q
    |||||||||||    
T  11006301 attgtgttcat 11006291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 408
Target Start/End: Complemental strand, 47452407 - 47452271
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||| |||| |||||||||||| || ||| || ||||||| ||||||||||||||| |||| || |||||  ||| |||||||||||| ||||||||    
T  47452407 tgtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 47452308  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    |||||||| |  |||||||||| | ||||||||||||    
T  47452307 ctctgatcctctctttgcaaaaacacattttgaactt 47452271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 7822547 - 7822667
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    |||||||||||||| | |||||||| | |||| |||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T
Q  372 ctctgatcataactttgcaaa 392  Q
    ||||||||   ||||||||||    
T  7822647 ctctgatccccactttgcaaa 7822667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 426
Target Start/End: Original strand, 7770982 - 7771136
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||||||||||| | ||||| |||||  || ||||||| |||||||||||||||||| |||| || || ||||||||||| ||||| ||||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacact 426  Q
    |||||||| | |||||| ||| || |||||| |||||  | ||||||||||||||    
T  7771082 ctctgatcctcactttgaaaattcacattttcaacttgcctctgcaacacacact 7771136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 7813061 - 7813163
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||||||||||| |||||||| | |||| |||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  375 tga 377  Q
    |||    
T  7813161 tga 7813163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 7800218 - 7800322
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||||||||||| |||||||| | |||| |||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||| |||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  375 tgatc 379  Q
    |||||    
T  7800318 tgatc 7800322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 7904610 - 7904745
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||| |||| ||||||||| || |||||| || || |||| || |||||||||||||||||||| || ||||||||||||| |||||| ||||||||    
T  7904610 tgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaact 407  Q
    |||||||| | |||||||||| || |||||| ||||    
T  7904710 ctctgatcctcactttgcaaattcacattttcaact 7904745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 426
Target Start/End: Original strand, 7789667 - 7789821
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||||||||||| ||||||| |||||  || ||||||| |||||||||||||||||| |||| || || ||||||||||| ||||| ||| ||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttat 7789766  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacact 426  Q
    ||| |||| | |||||| ||| || |||||| |||||  | | ||||||||||||    
T  7789767 ctccgatcctcactttgaaaattcacattttcaacttgcctccgcaacacacact 7789821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 402
Target Start/End: Complemental strand, 45372551 - 45372427
Alignment:
Q  278 tgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctga 377  Q
    |||||||||||||||| || |||||  |  | ||||| ||||||||||||||||||||||| || |||||||||||||| ||||| ||| ||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  378 tcataactttgcaaaatcgcatttt 402  Q
    || | | |||||||| || ||||||    
T  45372451 tcctcattttgcaaattcacatttt 45372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 48156925 - 48156825
Alignment:
Q  274 tatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatct 373  Q
    |||||||| | |||||||||||| |||||| | ||  |||||||||||||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  374 c 374  Q
    |    
T  48156825 c 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 442
Target Start/End: Original strand, 48862823 - 48862992
Alignment:
Q  276 tctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc- 374  Q
    |||||||||||||||||| || | |||| || | ||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| |||||||||||     
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T
Q  375 --tgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacactaatagaattgtgttca 442  Q
      ||||| | |||||||||| || |||||| |||||    | |||||||||||  |||||||| ||||||    
T  48862923 catgatcctcactttgcaaattcacattttcaacttactgccgcaacacacacccatagaattatgttca 48862992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 48890968 - 48891123
Alignment:
Q  253 atggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgta 352  Q
    ||||||||||||||    ||| |||| ||||| || ||||| ||  |||| |||||||||||| |||| ||||||||||||||||| || || |||||||    
T  48890968 atggagaagaagacactactgcatcttcctcacgagttgattatcgaaattatgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgta 48891067  T
Q  353 agtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    |||| ||||| |||||| |||| |||| | | |||||||| ||||||||| |||||    
T  48891068 agtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaactt 48891123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 374
Target Start/End: Complemental strand, 48735811 - 48735713
Alignment:
Q  276 tctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    |||||||||||| |||||| | |||||  |  ||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||||||    
T  48735811 tctgcctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 7238220 - 7238091
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||||||||||| | || || |||||  || ||||||| || ||||||||||||||  |||| || |||||||||||||| ||||| ||||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  372 ctctgatcataactttgcaaaatcgcattt 401  Q
    |||||| | | |||||||||| || |||||    
T  7238120 ctctgaccctcactttgcaaattcacattt 7238091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 402
Target Start/End: Complemental strand, 48171087 - 48170956
Alignment:
Q  274 tatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatct 373  Q
    |||||| ||| |||||||||| | |||||  || |||||||| |||||||||||||| ||||||| || |||||||||||||| |||||  |||||||||    
T  48171087 tatctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatct 48170988  T
Q  374 c---tgatcataactttgcaaaatcgcatttt 402  Q
    |   ||||| | |||||||||| |||||||||    
T  48170987 ctcatgatcctcactttgcaaattcgcatttt 48170956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 375
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    |||| |||||||||||||| || |||||| |  | |||||||| |||||||||||||||||||| ||||| ||||||||||  ||||| |||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  375 t 375  Q
    |    
T  45366618 t 45366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 407
Target Start/End: Original strand, 7877283 - 7877433
Alignment:
Q  257 agaagaagac-cggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagt 355  Q
    |||||||||| ||||| |||||| |||||||||||||| || |||||| || |  |||| | ||||||||||||||||||||| || ||  ||||||||     
T  7877283 agaagaagacacggcc-gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagc 7877381  T
Q  356 catggttatctcttatctctgatcataactttgcaaaatcgcattttgaact 407  Q
     |||||| ||||||||||||||||  || |||||||| || |||||| ||||    
T  7877382 tatggttttctcttatctctgatcccaattttgcaaattcacattttcaact 7877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 7907904 - 7908007
Alignment:
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    |||||| ||||||||||||||  | || ||| |  ||||||| |||||||||||||||| |||||| |||| |||| ||||||||||||| |||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  373 tctg 376  Q
    ||||    
T  7908004 tctg 7908007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 7774328 - 7774222
Alignment:
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    |||||| |||||||||||||| || |||||| || || || | ||||||||||||||||| | ||| || ||||||||||||  |||||| |||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  373 tctgatc 379  Q
    |||||||    
T  7774228 tctgatc 7774222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 443
Target Start/End: Complemental strand, 33134327 - 33134152
Alignment:
Q  271 ctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctctta 370  Q
    ||||||||||||||||||||||| || |  ||  ||||||| |||||||||||||||||||| ||||| || || ||||||||| | || || |||||||    
T  33134327 ctgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctctta 33134228  T
Q  371 tctc---tgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacactaatagaattgtgttcat 443  Q
    ||||   ||||| | |||||||||| || |||||| || |   | |  |||||||||||| || ||||||||||||    
T  33134227 tctctaatgatcctcactttgcaaattcacattttcaaataaccgcctcaacacacactagtaaaattgtgttcat 33134152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 407
Target Start/End: Complemental strand, 48148181 - 48148047
Alignment:
Q  276 tctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc- 374  Q
    ||||||| ||||||||||| | |||||| | |  |||||||| |||||||||||||| ||||| || ||||| |||||||| ||||| |||||||||||     
T  48148181 tctgcctgatgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T
Q  375 --tgatcataactttgcaaaatcgcattttgaact 407  Q
      ||||| | |||| ||||| || |||||||||||    
T  48148081 catgatcctcacttcgcaaattcacattttgaact 48148047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 390
Target Start/End: Original strand, 48902509 - 48902646
Alignment:
Q  253 atggagaagaagac-cggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgt 351  Q
    |||||||||||||| | ||| |||||| |||||||||||||| || |||||  ||  | |||| ||||| |||||||| || ||||| || |||||||||    
T  48902509 atggagaagaagacactgcc-gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgt 48902607  T
Q  352 aagtcatggttatctcttatctctgatcataactttgca 390  Q
    ||||| ||||| |||||||| ||||||||  ||||||||    
T  48902608 aagtcttggttttctcttatatctgatcagcactttgca 48902646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 49044728 - 49044626
Alignment:
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    ||||||||||||||| ||||| || |  ||  || ||||||| || |||| ||||||| ||||||| |||||||||||||||| |||||| |||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  373 tct 375  Q
    |||    
T  49044628 tct 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 7765232 - 7765328
Alignment:
Q  305 tgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattt 401  Q
    |||||||||||||||||||||||||  ||  ||| |||||  ||||||||| |||||| ||| |||||||||||| | |||||||||| || |||||    
T  7765232 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacattt 7765328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 48870123 - 48870227
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    |||||| ||||||||||||| | |||||  || ||||| |||||||||| |||||||| ||||| || || ||||||||||| ||||| | |||||||||    
T  48870123 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T
Q  375 tgatc 379  Q
     ||||    
T  48870223 cgatc 48870227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 48885809 - 48885913
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    |||||| ||||||||||||| | |||||  || ||||| |||||||||| |||||||| ||||| || || ||||||||||| ||||| | |||||||||    
T  48885809 atctgcatcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T
Q  375 tgatc 379  Q
     ||||    
T  48885909 cgatc 48885913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 48898303 - 48898403
Alignment:
Q  275 atctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    |||| |||||||||||| | || |||||  || ||||  |||| ||||||||||||| |||||| ||||||||||||||||| ||||| || ||||||||    
T  48898303 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 48898402  T
Q  375 t 375  Q
    |    
T  48898403 t 48898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 408
Target Start/End: Original strand, 50668622 - 50668757
Alignment:
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    |||||||| | | |||||||| || |||||  || ||||||| || ||||| | |||||||||||| ||||| |||||||| || ||||| ||||| |||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 50668721  T
Q  373 tctgatcataactttgcaaaatcgcattttgaactt 408  Q
    || ||||| || ||||| || || ||||||||||||    
T  50668722 tccgatcacaattttgctaattctcattttgaactt 50668757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 47207552 - 47207614
Alignment:
Q  312 gttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| || || ||||| |||||    
T  47207552 gttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcatctc 47207614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 37827447 - 37827358
Alignment:
Q  319 gtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    ||||||||||||||| ||||||  || |||||||||||||||||| ||||||| ||| |||   |||||||||| || |||||| |||||    
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaactt 37827358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 49049053 - 49048996
Alignment:
Q  318 ggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctct 375  Q
    ||||| ||||||| ||||||| |||||||||||||||| |||||| ||||||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 408
Target Start/End: Complemental strand, 49041638 - 49041502
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    |||||||| ||||||||||||| || | |||  |  |||| || || ||||||||||||||  |||| || || ||||| ||||| ||||| ||||||||    
T  49041638 tgtatctgtctcatgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttat 49041539  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    ||||||||   | |||||||| || |||||| |||||    
T  49041538 ctctgatccccattttgcaaattctcatttttaactt 49041502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 408
Target Start/End: Complemental strand, 50251308 - 50251172
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||||||| |||||||| |  |||||  |  | ||||| || |||||| |||||||||  || ||||| |||| |||||| ||||| ||||||||    
T  50251308 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttat 50251209  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    ||||||||   ||| |||||| | ||||||| |||||    
T  50251208 ctctgatccccactgtgcaaatttgcattttcaactt 50251172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 394
Target Start/End: Original strand, 50672161 - 50672220
Alignment:
Q  335 gttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaat 394  Q
    |||| |||||||||| |||||||||| | ||||| ||||||||||| || ||||||||||    
T  50672161 gtttcaagtgtgtttctaagtcatggctttctctcatctctgatcacaattttgcaaaat 50672220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 12199897 - 12200017
Alignment:
Q  284 atgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataa 383  Q
    ||||||| || || |||||| || ||||||| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||||| | |    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12199996  T
Q  384 ctttgcaaaatcgcattttga 404  Q
    ||||||||| |||||| ||||    
T  12199997 ctttgcaaattcgcatgttga 12200017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 404
Target Start/End: Original strand, 12444325 - 12444445
Alignment:
Q  284 atgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataa 383  Q
    ||||||| || || |||||| || ||||||| ||||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||||| | |    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12444424  T
Q  384 ctttgcaaaatcgcattttga 404  Q
    ||||||||| |||||| ||||    
T  12444425 ctttgcaaattcgcatgttga 12444445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 402
Target Start/End: Complemental strand, 4032410 - 4032286
Alignment:
Q  278 tgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctga 377  Q
    |||||||||||||||| || |||||| |  ||||  ||||  ||||||||||||||||||| |||||||||||||| || |||||| ||||||| |||||    
T  4032410 tgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctga 4032311  T
Q  378 tcataactttgcaaaatcgcatttt 402  Q
    || | |||||||||| |||||||||    
T  4032310 tcctcactttgcaaattcgcatttt 4032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 435
Target Start/End: Original strand, 15348477 - 15348603
Alignment:
Q  309 gaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    |||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||||||| | |||| ||||| || |||||| || ||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 15348576  T
Q  409 tgcactgcaacacacactaatagaatt 435  Q
      | | ||||||||||||  |||||||    
T  15348577 accgccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 12194892 - 12194999
Alignment:
Q  285 tgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataac 384  Q
    |||||| || || |||||| || ||||||| ||||||||||||||| || |||| || ||  |||||||||||||||||||||||||||||||||   ||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12194991  T
Q  385 tttgcaaa 392  Q
    ||||||||    
T  12194992 tttgcaaa 12194999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 12439320 - 12439427
Alignment:
Q  285 tgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataac 384  Q
    |||||| || || |||||| || ||||||| ||||||||||||||| || |||| || ||  |||||||||||||||||||||||||||||||||   ||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacac 12439419  T
Q  385 tttgcaaa 392  Q
    ||||||||    
T  12439420 tttgcaaa 12439427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 21015355 - 21015457
Alignment:
Q  273 gtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatc 372  Q
    |||||||||||| |||||||| || | |||  |||||||||||||||| | ||||||| ||||||| |||||||||||||||| || ||| |||||||||    
T  21015355 gtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatc 21015454  T
Q  373 tct 375  Q
    |||    
T  21015455 tct 21015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 426
Target Start/End: Complemental strand, 21980144 - 21979990
Alignment:
Q  272 tgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||||||||||| |||||||  ||||| || | |||| ||| || ||||||||   |||||| ||||||||||||||||| ||||| ||||| ||    
T  21980144 tgtatctgcctcatgaactgataatcgaaatcctgctaaggtaaccagtaaagtctctctcacgtttcaagtgtgtttgtaagtcttggttttctctcat 21980045  T
Q  372 ctctgatcataactttgcaaaatcgcattttgaactttgcactgcaacacacact 426  Q
    |||| |||  |||||||| || || |||||||| |||  | | ||||||||||||    
T  21980044 ctctcatcccaactttgcgaattcacattttgatcttgccgccgcaacacacact 21979990  T

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Target: scaffold0508 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 408
Target Start/End: Original strand, 11878 - 11976
Alignment:
Q  310 aggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    ||||||||| | ||||||||||| ||||| || |  ||||||||||||||||| ||||||||||||||| || |||||||||| || |||||| |||||    
T  11878 aggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaactt 11976  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 440
Target Start/End: Original strand, 29695768 - 29695898
Alignment:
Q  310 aggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaacttt 409  Q
    |||||||| || ||||||||||| ||||| || || |||||||||| ||||||||||||||| ||| | | | |||||||||| || |||||| |||||     
T  29695768 aggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaaattcacattttcaactta 29695867  T
Q  410 gcactgcaacacacactaatagaattgtgtt 440  Q
     ||| || |||||||| ||||||||| ||||    
T  29695868 ccaccgctacacacacgaatagaattatgtt 29695898  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 29712929 - 29712866
Alignment:
Q  312 gttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctct 375  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 29687669 - 29687765
Alignment:
Q  312 gttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    |||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||| || ||| | | | |||||||||| || |||||| |||||    
T  29687669 gttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaactt 29687765  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 178638 - 178699
Alignment:
Q  313 ttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||| || ||||||||||| ||||| || |||||||||||||| ||||||||||| |||||    
T  178638 ttaccagttaagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 1812036 - 1812105
Alignment:
Q  305 tgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||||||||||| ||||||| ||| |||||||  || || |||||||||| |||||| |||||||||||    
T  1812036 tgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 42562791 - 42562728
Alignment:
Q  312 gttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctct 375  Q
    |||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||||| ||||||    
T  42562791 gttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 24340030 - 24340112
Alignment:
Q  310 aggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaa 392  Q
    ||||||||||| ||||||||||| ||||| || | |||||||||||||||||| || |||||||||||| || ||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaa 24340112  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 408
Target Start/End: Original strand, 24309796 - 24309891
Alignment:
Q  313 ttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctctgatcataactttgcaaaatcgcattttgaactt 408  Q
    |||||||| ||||||||||| ||||| || |  |||||||||| |||||| |||||||||||||||  | |||||||||| || |||||| |||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaactt 24309891  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 24415417 - 24415514
Alignment:
Q  274 tatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttat 371  Q
    ||||||||| |||||||||| |  |||||| | ||||| |||||||| ||||||||||| ||||| || || ||| ||||||| ||||| ||||||||    
T  24415417 tatctgcctgatgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 24322086 - 24322142
Alignment:
Q  318 ggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatctc 374  Q
    ||||||||||||||| ||||| || || ||||||||||| ||||| |||||||||||    
T  24322086 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 24366735 - 24366853
Alignment:
Q  274 tatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctcttatacgttttaagtgtgtttgtaagtcatggttatctcttatct 373  Q
    ||||| ||| |||||||||| |  |||||| || |||||||||| ||  |  |||| || ||||| || |||||||| ||||||||||| ||||||||||    
T  24366735 tatcttcctgatgaattgattacccaaatcctgctgaggttaccagttgaaactctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatct 24366834  T
Q  374 ctgatcataactttgcaaa 392  Q
    |  ||| | ||||||||||    
T  24366835 caaatccttactttgcaaa 24366853  T

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