View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_35 (Length: 416)
Name: NF4125_low_35
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 30517868 - 30517476
Alignment:
| Q |
15 |
ttaattaagacacaagtttttcgataagcctttttgcagtttttgccctaaacgacaaaatccatggtttggagttatctcagttaacctcactcactaa |
114 |
Q |
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| T |
30517868 |
ttaattaacacacaagttttt-gataagcctttttgcagtttttgccctaaacgacaaaatccatggtttggagttatctcagttaacctcactcactat |
30517770 |
T |
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| Q |
115 |
agatatatatttgagtattatttttgttttattttgacactagtttgaggttgttaaccaaccactatatataggcttgtttgtacaaatccttatgccg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517769 |
agatatatatttgagtattatttttgttttattttgacactagtttgaggttgttaaccaaccactatatataggcttgtttgtacaaatccttatgccg |
30517670 |
T |
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| Q |
215 |
tactcatgttactgcttactcccattttgacttttcttagctctaatcttttttcatagacttctcattctcacaaagggttgagtt--gagataagtaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
30517669 |
tactcatgttactgcttactcccattttgacttttgttagctctaatcttttgtcatagacttctcattctcacaaagggttcagctgagagataagtaa |
30517570 |
T |
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| Q |
313 |
agtctgataaaatatcgttcctctgcatttgaactcttggtatcccaaacaatccgtccttaaccgaaactcattaagcaaattttttctttgtttcttc |
412 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30517569 |
agtc----------tcgttcctttgcatttgaactcttggtaacccaaacaatccgtccttaaccgaaactcattaagcaaattttttctttgtttcttc |
30517480 |
T |
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