View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_36 (Length: 411)
Name: NF4125_low_36
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 6208234 - 6208606
Alignment:
| Q |
21 |
tgccagctgccattgcctccttctcctcctcttcttcttcattcatctctcatccattcacacgtttttcaacccaactcaacacaactctgtttctttc |
120 |
Q |
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| T |
6208234 |
tgccagctgccattgcctccttctcctcctcttcttcttcattcatctctcatccattcacacgtttttcaacccaactcaacacaactctgtttctttc |
6208333 |
T |
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| Q |
121 |
tctaaccacacacacatgactctgttcttcaaaaaacagagcattcttcttttttcttcatagaatgcacaacaccgacacagcaacaatgaacgaccaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6208334 |
tctaaccacacacacatgactctgttcttcaaaaaacagagcattcttcttttttcttcatagaatgcacaacaccgacacagcaacaatgaacgaccaa |
6208433 |
T |
|
| Q |
221 |
ctctcaaaccaaacctcaatcttcggtctccgtctctacgtcatcctcggcatcatcgttggtgtcatcatcgtcctcctcctcttcttcatctctatct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6208434 |
ctctcaaaccaaacctcaatcttcggtctccgtctctacgtcatcctcggcatcatcgttggtgtcatcatcgtcctcctcctcttcttcatctctatct |
6208533 |
T |
|
| Q |
321 |
accttgctttcaaacacaacaactccnnnnnnnccaaaacaactatcccaaacatctccaaagatgttccaga |
393 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6208534 |
accttgctttcaaacacaacaactccaaaaaaaccaaaacaactatcccaaacatctccaaagatgttccaga |
6208606 |
T |
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