View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_38 (Length: 394)
Name: NF4125_low_38
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 37875853 - 37875470
Alignment:
| Q |
1 |
ttgaagtcccatgtttgcaagcttattggttaataagctcatgctgttgtccgattttaatctgcaaagataaactacatagtcctgtcctttaatcagc |
100 |
Q |
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| T |
37875853 |
ttgaagtcccatgtttgcaagcttattggttaataagctcatgctgttgtccgattttaatctgcaaagataaactacatagtcctgtcctttaatcagc |
37875754 |
T |
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| Q |
101 |
aagagtgagttctacactctaaattcagtggttggtccttaatgtattgttagctatttttctccaggttgttggagaccgaaaaggagcagtgtttggt |
200 |
Q |
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| T |
37875753 |
aagactgagttctacactctaaattcagtggttggtccttaatgtattgttagctatttttctccaggttgttggagaccgaaaaggagcagtgtttggt |
37875654 |
T |
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| Q |
201 |
ggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtcaggttttatttttgtactttgatgctatcgt-ctttttccctttgcaac |
299 |
Q |
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| T |
37875653 |
ggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtcaggttctatttttgtactttgatgctatcgtcctttttccctttgcaac |
37875554 |
T |
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| Q |
300 |
aatgttaatgtttattttatcttgttgacataaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtc |
383 |
Q |
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| T |
37875553 |
aatgttaatgtttattttatcttgttgacataaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtc |
37875470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 39548846 - 39548773
Alignment:
| Q |
311 |
ttattttatcttgttgaca-taaattttgtacagggaacaaacagtacatttgttttcacaaacatctctggtc |
383 |
Q |
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| T |
39548846 |
ttatattatcttgttgacagtagattttgtacagggaactaacagtacatatgttttctcaaatatctctggtc |
39548773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 39549032 - 39548946
Alignment:
| Q |
166 |
aggttgttggagaccgaaaaggagcagtgtttggtggcttggttgaagcaccccttcgaccatccaacaagagaaaataccaggtca |
252 |
Q |
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| T |
39549032 |
aggttgttggagataaaaaaggagcagtatttggcagcttggttgaaacacctctcaaaccatccagcaagagaaaataccaggtca |
39548946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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