View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_low_4 (Length: 818)
Name: NF4125_low_4
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 756; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 19 - 813
Target Start/End: Complemental strand, 51548785 - 51547990
Alignment:
| Q |
19 |
atttgtaatttcgacttatttgatgactacatagacagtgctatacccatttagggaccaaaatcatcatttactctttttgtttacattagctgagtaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548785 |
atttgtaatttcgacttatttgatgactacatagacagtgctatacccgtttagggaccaaaatcatcatttactctttttgtttacattagctgagtaa |
51548686 |
T |
|
| Q |
119 |
aa-gactaagtagaacaaataagctaaacctatattcctcgttatttctctgatcaaatcccgtcatcataaggaaaagaagtagaaccaatccaagcat |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548685 |
aaagactaagtagaacaaataagctaaacctatattcctcgttatttctctgatcaaatcccgtcatcataaggaaaagaagtagaaccaatccaagcat |
51548586 |
T |
|
| Q |
218 |
caccgataataaactctgaaacagtgaaattatttgcactatcaaaatccattaaatgataccctaaccattttactcggttatccgtcgcagaaccagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548585 |
caccgataataaactctgaaacagtgaaattatttgcactatcaaaatccattaaatgataccctaaccattttactcggttatccgtcgcagaaccagg |
51548486 |
T |
|
| Q |
318 |
tccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcatcagaagaccatttcgtccatcccattggatcaatgaacacatcaatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548485 |
tccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcatcagaagaccatttcgtccatcccattggatcaatgaacacatcaatg |
51548386 |
T |
|
| Q |
418 |
taagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggtaactcttgatgctgttagagttgttatacaaatcagtagtagctaaaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51548385 |
taagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggtaactcttgatgttgttatagttgttatacaaatcagtagtagctaaaa |
51548286 |
T |
|
| Q |
518 |
ttgaacagttttggattgagatgccagtgtcttcatcaggtgaatctcttgactgtgcagtgatgacagtgtattggttaggtaatggcattcttgatat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548285 |
ttgaacagttttggattgagatgccagtgtcttcatcaggtgaatctcttgactgtgcagtgattacagtgtattggttaggtaatggcattcttgatat |
51548186 |
T |
|
| Q |
618 |
aatattacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatatcacactctctatagaattgtctaaatgagtgaaca |
717 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51548185 |
aatgttacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatgtcacactctctatagaattgtctaaatgagtgaaca |
51548086 |
T |
|
| Q |
718 |
taaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcattcactcttaatgcaactgcttgatgcttctctgctcct |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51548085 |
taaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcgttcactcttaatgcaactgcttgatgcttctctggtcct |
51547990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 171 - 808
Target Start/End: Complemental strand, 19477059 - 19476428
Alignment:
| Q |
171 |
tcaaatcccgtcatcataaggaaaagaagtagaaccaatccaagcatcaccgataataaactctgaaacagtgaaattatttgcactatcaaaatccatt |
270 |
Q |
| |
|
|||||| || ||||||||||||| |||||||| ||| ||| |||||| ||||||||||| |||||| ||||||||| |||| || | ||||||| |
|
|
| T |
19477059 |
tcaaattccatcatcataaggaactgaagtagactcaagccattgatcaccaataataaactcagaaacactgaaattatatgcatcattataatccatc |
19476960 |
T |
|
| Q |
271 |
aaatgataccctaaccattttactcggttatccgtcgcagaaccaggtccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcat |
370 |
Q |
| |
|
|||||||| || | ||||| || || ||||| || |||||||||||||||||| || | ||||||||| |||| || ||||| |||| ||||| |
|
|
| T |
19476959 |
aaatgataaccaacccattcaacacgattatcaatctttgaaccaggtccataattttcatattcaccataaaacaatgtatccaaaccttgatcattt- |
19476861 |
T |
|
| Q |
371 |
cagaagaccatttcgtccatcccattggatcaatgaacacatcaatgtaagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggta |
470 |
Q |
| |
|
|||||||| ||||| ||| || ||||||| || ||||||| ||||||||||| ||||| || |||||| |||||||||| ||||| |||||||| |
|
|
| T |
19476860 |
-----gaccatttggtccaacccttttgatcaataaaatcatcaatataagactcaattaaaaccgttctagaaaaaaccctccacggcctcccaaggta |
19476766 |
T |
|
| Q |
471 |
actcttgatgctgttagagttgttatacaaatcagtagtagctaaaattgaacagttttggattgagatgccagtgtcttcatcaggtgaatctcttgac |
570 |
Q |
| |
|
|||||||| | ||||||| ||| | ||| ||||| | ||| ||||| ||||||||||| || || |||||||| ||||| ||| | ||| |
|
|
| T |
19476765 |
actcttgaccttactagagtttgaataaagctcatccgtagcgataatcgaacaattttggattgaaattcccgtgtcttcgtcagggttatcccgtgat |
19476666 |
T |
|
| Q |
571 |
tgtgcagtgatgacagtgtattggttaggtaatggcattcttgatataatattacatgcttgtaaaactactgctgcatttccaaatatgtaatctatgg |
670 |
Q |
| |
|
|| || || || || || |||| |||||||||||||||||||| || | ||| ||||||| |||||||| || || ||||||||| ||||||| | |
|
|
| T |
19476665 |
tgcgcggttataactgtaaattgaccaggtaatggcattcttgatacgatgtcgcattcttgtaatactactgcggcgttaccaaatatgaaatctattg |
19476566 |
T |
|
| Q |
671 |
tcccaaaaatatcacactctctatagaattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtc |
770 |
Q |
| |
|
|||| |||| || || || | ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
|
|
| T |
19476565 |
tcccgtaaatgtcgcattcgcggtagaattgtctgaatgagtggacataaagtgtgtcttggtaaccataaattgcgcatttgtaaaatgctgttaaatc |
19476466 |
T |
|
| Q |
771 |
tgcattcactcttaatgcaactgcttgatgcttctctg |
808 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
19476465 |
tgcatttactcttaatgcaactgcttgatgtttctctg |
19476428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University