View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_40 (Length: 393)
Name: NF4125_low_40
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_40 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 157 - 393
Target Start/End: Complemental strand, 21154109 - 21153873
Alignment:
| Q |
157 |
gtaacttatgcctccatatcnnnnnnnnnacatcaaaatttattagattagatagaatgaaaaattcaaggtggcaatattaaagataaggtaaaaatta |
256 |
Q |
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| T |
21154109 |
gtaacttatgcctccatatctttttttttacatcaaaatttattagattagatagaatgaaaaattcaaggtggcaatattaaagataaggtaaaaatta |
21154010 |
T |
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| Q |
257 |
attcacctctctttagagataaaccactttcaagagatagctttgatatcttcaaatatctcttccatgtgtggaatctttgaagacaagataatctaac |
356 |
Q |
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| T |
21154009 |
attcacctctctttagagataaaccactttcaagagatagctttgatatcttcaaatatctcttccatgtgtggaatttttgaagagaagataatctaac |
21153910 |
T |
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| Q |
357 |
tccaagcctcctatatttttcaaataattgcatgccg |
393 |
Q |
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| T |
21153909 |
tccaagccttctatatttttcaaataattgcacgccg |
21153873 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 21154252 - 21154168
Alignment:
| Q |
18 |
tgtacttatgttttgttcaaactttggacacgtgcgt----gcgtttcgatgtttttctgttcttctcttccttaaactagcaag |
98 |
Q |
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| T |
21154252 |
tgtacttatgttttgtttaaactttggactcgtgcgtgcgtgcgtttcgatgtttttctgttcttctcttccttaaactagcaag |
21154168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 353
Target Start/End: Original strand, 3776010 - 3776093
Alignment:
| Q |
270 |
tagagataaaccactttcaagagatagctttgatatcttcaaatatctcttccatgtgtggaatctttgaagacaagataatct |
353 |
Q |
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| T |
3776010 |
tagagataaaccacctcgaagagatagatttgatatcattaactatctattccatacgtggagtctttgaagagaagataatct |
3776093 |
T |
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