View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_41 (Length: 393)
Name: NF4125_low_41
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 3635110 - 3635477
Alignment:
| Q |
3 |
atcacctcttaaaaagattgtcatatcgtcaatgagaattgaatccataatcttacgagtgagtcaactctttatcaattaaatcaattttaataggtag |
102 |
Q |
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| T |
3635110 |
atcacctcttaaaaagattgtcatatcgtcaatgagaattgaatccataatcttacgagtgagtcaactctttatcgattaaatcaattttaataggtag |
3635209 |
T |
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| Q |
103 |
tgaaaatcttttatgtataacatttgaaggtcactaggtagtccacagtcatgttgtggtccaaagtacggaaggaatctatctagcaaccaatttagaa |
202 |
Q |
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| T |
3635210 |
tgaaaaacttttatgtataacatttgaaggtcactaggtagtccacattcatattgtggtccaaagtacggaaggaatctatctagcaaccaatttagaa |
3635309 |
T |
|
| Q |
203 |
aaaattgttttacgtgaaggaagctgacaattttatcatttataagtgtttgaacaaagtaagtatttaatttcaaagataagaatcttgaggctcattt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635310 |
aaaattgttttacgtgaaggaagctgacaattttatc-tttataagtgtttgaacaaagtaagtatttaatttcaaagataagaatcttgaggctcattt |
3635408 |
T |
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| Q |
303 |
gaagcaaccttccctacagattgctcaaataatttctctgcttaattccatttttgttttgcattattg |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635409 |
gaagcaaccttccctacagattgctcaaataatttctctgcttaattccatttttgttttgcattattg |
3635477 |
T |
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