View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_42 (Length: 383)
Name: NF4125_low_42
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 40407261 - 40407635
Alignment:
| Q |
1 |
tatgcaaaaacgtattggaaatgagttttgtaatcgtatttaaaatgagttttcatcaatgtgattgaatagaatttgcataaggattggtataagtgta |
100 |
Q |
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| T |
40407261 |
tatgcaaaaacgtattggaaatgagttttgtaatcgtatttaaaatgagttttcatcaatatgattgaatagaatttgcataaggattgttataagtgta |
40407360 |
T |
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| Q |
101 |
aaaataccaagttaaaaacaaatataagagactaaaaagatgatggacaaaataagaactcacatagtgtattatacannnnnnnnnnnnngacaaggtg |
200 |
Q |
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| T |
40407361 |
aaaataccaagttaaaaacaaatataagagactaaaaagatgatggacaaaataagaactcacatagtgtattataca-ttttttttttttgacaaggta |
40407459 |
T |
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| Q |
201 |
gtgtattatacatgtaatttgattatgagtttaaatgtttaattggtgcatgcggaggaatgtctattgaagaaacagtccattaagtggatcttcaaaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
40407460 |
gtgtattatacatgtaatttgattatgactttaaatgtttaattggtgcatgcggaggaatgtctattgaaaaaacagtccattaagtggatcttaaaaa |
40407559 |
T |
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| Q |
301 |
actccaagaaaaccaatgtgtcccttattgcaagtaaacaatttaggcttaagggttaactcttgtttgatgatgt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40407560 |
actccaagaaaaccaatgtgtcccttattgcaagtaaacaatttaggcttaagggttaactcttgttcgatgatgt |
40407635 |
T |
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