View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_43 (Length: 371)

Name: NF4125_low_43
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_43
NF4125_low_43
[»] chr6 (24 HSPs)
chr6 (99-353)||(26556355-26556610)
chr6 (14-76)||(26556278-26556340)
chr6 (126-170)||(28046196-28046240)
chr6 (112-171)||(18256881-18256940)
chr6 (126-170)||(4450261-4450305)
chr6 (135-171)||(6833476-6833512)
chr6 (100-171)||(20744136-20744208)
chr6 (112-176)||(26320567-26320631)
chr6 (102-176)||(24623310-24623385)
chr6 (123-177)||(3273993-3274047)
chr6 (133-171)||(7927698-7927736)
chr6 (126-176)||(9111040-9111090)
chr6 (126-176)||(32053781-32053831)
chr6 (126-176)||(33824874-33824924)
chr6 (126-167)||(334142-334183)
chr6 (133-170)||(2044672-2044709)
chr6 (126-171)||(7081672-7081717)
chr6 (126-175)||(8637455-8637504)
chr6 (103-171)||(13496114-13496183)
chr6 (123-176)||(29069476-29069529)
chr6 (102-171)||(33938673-33938742)
chr6 (102-177)||(788858-788934)
chr6 (127-171)||(13376310-13376354)
chr6 (107-147)||(25023648-25023688)
[»] chr8 (26 HSPs)
chr8 (123-171)||(32223894-32223942)
chr8 (102-176)||(13286124-13286198)
chr8 (102-171)||(27718887-27718957)
chr8 (103-176)||(37938488-37938562)
chr8 (126-171)||(1877680-1877725)
chr8 (135-176)||(15310315-15310356)
chr8 (135-176)||(15490684-15490725)
chr8 (135-176)||(34997451-34997492)
chr8 (133-169)||(574384-574420)
chr8 (102-176)||(8999884-8999960)
chr8 (133-176)||(6038300-6038343)
chr8 (133-171)||(2958423-2958461)
chr8 (102-171)||(19163529-19163599)
chr8 (112-174)||(30427726-30427788)
chr8 (133-171)||(44293573-44293611)
chr8 (126-171)||(17062357-17062402)
chr8 (126-171)||(17585956-17586001)
chr8 (126-171)||(20469329-20469374)
chr8 (135-176)||(26914098-26914139)
chr8 (126-171)||(37015854-37015899)
chr8 (118-171)||(37750009-37750062)
chr8 (100-159)||(4830018-4830078)
chr8 (108-168)||(7968940-7969000)
chr8 (126-170)||(10601762-10601806)
chr8 (134-174)||(10871920-10871960)
chr8 (135-171)||(44654992-44655028)
[»] chr1 (28 HSPs)
chr1 (102-175)||(13401591-13401665)
chr1 (102-171)||(18166600-18166670)
chr1 (133-171)||(23309462-23309500)
chr1 (126-176)||(45190287-45190337)
chr1 (126-176)||(52441529-52441579)
chr1 (100-176)||(3693787-3693864)
chr1 (126-175)||(16967212-16967261)
chr1 (126-171)||(25532971-25533016)
chr1 (112-176)||(6818936-6819000)
chr1 (126-164)||(13779583-13779621)
chr1 (133-171)||(15549262-15549300)
chr1 (102-171)||(27533241-27533311)
chr1 (100-169)||(32560973-32561043)
chr1 (102-171)||(34632167-34632237)
chr1 (126-176)||(34766853-34766903)
chr1 (126-176)||(42045390-42045440)
chr1 (135-168)||(925454-925487)
chr1 (126-175)||(8253733-8253782)
chr1 (126-171)||(26755614-26755659)
chr1 (118-171)||(26803461-26803514)
chr1 (126-171)||(27449463-27449508)
chr1 (102-171)||(42267198-42267267)
chr1 (126-171)||(44641525-44641570)
chr1 (135-171)||(7308448-7308484)
chr1 (118-170)||(19262917-19262969)
chr1 (103-158)||(28006753-28006809)
chr1 (126-170)||(45140024-45140068)
chr1 (102-169)||(49196379-49196447)
[»] chr7 (22 HSPs)
chr7 (123-176)||(35142164-35142217)
chr7 (126-176)||(8683063-8683113)
chr7 (102-176)||(21136824-21136898)
chr7 (135-171)||(30781450-30781486)
chr7 (112-171)||(3953439-3953498)
chr7 (133-176)||(20455129-20455172)
chr7 (135-170)||(20482205-20482240)
chr7 (125-168)||(45200194-45200237)
chr7 (133-171)||(27772033-27772071)
chr7 (126-176)||(39926556-39926606)
chr7 (102-180)||(46207749-46207827)
chr7 (126-175)||(5317306-5317355)
chr7 (126-171)||(8879765-8879810)
chr7 (126-171)||(10244725-10244770)
chr7 (102-178)||(18773749-18773826)
chr7 (126-171)||(25246769-25246814)
chr7 (123-176)||(32263000-32263053)
chr7 (126-171)||(39801704-39801749)
chr7 (123-171)||(1261173-1261221)
chr7 (102-158)||(18684141-18684197)
chr7 (133-177)||(20243247-20243291)
chr7 (126-178)||(22780311-22780363)
[»] chr4 (31 HSPs)
chr4 (100-171)||(43374263-43374335)
chr4 (126-176)||(12698590-12698640)
chr4 (126-176)||(26033268-26033318)
chr4 (126-176)||(30051885-30051935)
chr4 (123-171)||(32180828-32180876)
chr4 (102-168)||(11949756-11949823)
chr4 (126-177)||(36203228-36203279)
chr4 (137-176)||(46056152-46056191)
chr4 (126-176)||(2186351-2186401)
chr4 (102-171)||(9946425-9946495)
chr4 (118-176)||(10497252-10497310)
chr4 (126-168)||(11286799-11286841)
chr4 (133-171)||(14136089-14136127)
chr4 (126-172)||(21317356-21317402)
chr4 (126-176)||(21623437-21623487)
chr4 (126-176)||(23986452-23986502)
chr4 (126-176)||(44221440-44221490)
chr4 (102-171)||(49041974-49042044)
chr4 (126-176)||(52270048-52270098)
chr4 (126-168)||(53142607-53142649)
chr4 (133-174)||(16686197-16686238)
chr4 (102-178)||(24664984-24665061)
chr4 (133-170)||(38352761-38352798)
chr4 (126-171)||(39171388-39171433)
chr4 (126-175)||(43155073-43155122)
chr4 (134-171)||(43627293-43627330)
chr4 (126-178)||(7030911-7030963)
chr4 (102-177)||(10401389-10401465)
chr4 (102-169)||(19479470-19479538)
chr4 (108-166)||(29099708-29099768)
chr4 (126-174)||(29681475-29681523)
[»] scaffold0180 (1 HSPs)
scaffold0180 (112-171)||(17730-17789)
[»] chr3 (28 HSPs)
chr3 (124-171)||(529178-529225)
chr3 (102-171)||(7868720-7868789)
chr3 (135-176)||(54113333-54113374)
chr3 (112-176)||(43777060-43777124)
chr3 (100-171)||(48315015-48315087)
chr3 (133-176)||(12131698-12131741)
chr3 (102-176)||(16980347-16980422)
chr3 (126-176)||(10498713-10498763)
chr3 (126-176)||(16792992-16793042)
chr3 (126-176)||(21331435-21331485)
chr3 (126-176)||(43011315-43011365)
chr3 (102-176)||(49088745-49088819)
chr3 (126-168)||(50570207-50570249)
chr3 (126-171)||(8139713-8139758)
chr3 (102-175)||(8942011-8942084)
chr3 (123-176)||(20296287-20296340)
chr3 (126-171)||(20370299-20370344)
chr3 (126-175)||(21549032-21549081)
chr3 (135-176)||(37413490-37413531)
chr3 (126-171)||(38387970-38388015)
chr3 (135-176)||(43316628-43316669)
chr3 (102-170)||(47039426-47039495)
chr3 (115-166)||(48961050-48961103)
chr3 (126-163)||(51402731-51402768)
chr3 (109-176)||(977941-978009)
chr3 (126-178)||(1149087-1149139)
chr3 (123-167)||(24428488-24428532)
chr3 (126-178)||(44579627-44579679)
[»] chr2 (28 HSPs)
chr2 (110-176)||(22571866-22571933)
chr2 (126-176)||(33063979-33064029)
chr2 (135-176)||(23359130-23359171)
chr2 (103-166)||(3113721-3113785)
chr2 (123-171)||(40896524-40896572)
chr2 (102-176)||(22523005-22523080)
chr2 (103-169)||(29734691-29734758)
chr2 (102-176)||(3197073-3197147)
chr2 (129-175)||(5842154-5842200)
chr2 (126-176)||(7206118-7206168)
chr2 (102-171)||(7350544-7350614)
chr2 (126-176)||(26999103-26999153)
chr2 (126-176)||(27244650-27244700)
chr2 (126-176)||(44694681-44694731)
chr2 (126-171)||(1861827-1861872)
chr2 (126-171)||(9383227-9383272)
chr2 (133-170)||(9459082-9459119)
chr2 (126-171)||(9519732-9519777)
chr2 (126-171)||(10195680-10195725)
chr2 (126-171)||(22608525-22608570)
chr2 (126-175)||(23756706-23756755)
chr2 (126-175)||(24305323-24305372)
chr2 (126-171)||(25186260-25186305)
chr2 (126-171)||(35820319-35820364)
chr2 (123-171)||(34444051-34444099)
chr2 (102-169)||(36264472-36264540)
chr2 (126-170)||(39068726-39068770)
chr2 (135-171)||(42714437-42714473)
[»] chr5 (19 HSPs)
chr5 (126-176)||(19248472-19248522)
chr5 (126-171)||(39610359-39610404)
chr5 (124-171)||(4573075-4573122)
chr5 (133-176)||(8839448-8839491)
chr5 (133-176)||(30488918-30488961)
chr5 (126-181)||(34436839-34436894)
chr5 (126-176)||(37932323-37932373)
chr5 (102-171)||(40715942-40716012)
chr5 (127-176)||(10531533-10531582)
chr5 (107-176)||(13220619-13220688)
chr5 (126-171)||(17151860-17151905)
chr5 (133-170)||(22394034-22394071)
chr5 (102-170)||(25603993-25604062)
chr5 (102-171)||(41650933-41651002)
chr5 (119-176)||(42505865-42505922)
chr5 (135-171)||(13880194-13880230)
chr5 (115-171)||(24485697-24485753)
chr5 (107-170)||(27679497-27679561)
chr5 (135-171)||(37438554-37438590)
[»] scaffold0768 (1 HSPs)
scaffold0768 (135-171)||(6416-6452)
[»] scaffold0350 (1 HSPs)
scaffold0350 (133-176)||(1241-1284)
[»] scaffold0118 (1 HSPs)
scaffold0118 (126-171)||(39996-40041)
[»] scaffold0197 (1 HSPs)
scaffold0197 (135-171)||(21782-21818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (135-171)||(244477-244513)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 99 - 353
Target Start/End: Original strand, 26556355 - 26556610
Alignment:
Q  99 attgtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacagagacgttctattataaagacg 198  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26556355 attgtggccgggatttgaacccgcactttacatgtattatgcattatctatatcaactgaactaagctcacgaagacagagacgttctattataaagacg 26556454  T
Q  199 aagaaaaagcatagctagctatttatatttttatgaagacaaaaaattacttggtaagaaaaccatcttcgatgcacttgtttagaaaattagtttagat 298  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26556455 aagaaaaagcatagctagctatttatatttttattaagacaaaaaaatacttggtaagaaaaccatcttcgatgcacttgtttagaaaattagtttagat 26556554  T
Q  299 taaata-ttattaatataataaaacttaagtcgctattttttctgtgagcttagtt 353  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26556555 tatatatttattaatataataaaacttaagtcgctattttttctgtgagcttagtt 26556610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 26556278 - 26556340
Alignment:
Q  14 agatcatgagttattttagtgttatgttttattctaagatgagttgtgttgtcggagatgttc 76  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||    
T  26556278 agatcatgagttattttagtgtattgttttattctaagatgagatgtgttgccggagatgttc 26556340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 28046196 - 28046240
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  28046196 ttgcatatattatgcattgtctttatcaactgaactaagctcacg 28046240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 18256940 - 18256881
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||| || |||||| ||||||||||||||  |||||||||| ||||||||||||    
T  18256940 tttgaacccggaccttgcatatattatgcattgtccttatcaactgagctaagctcacga 18256881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 4450305 - 4450261
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||| ||||||||||||||| |||||||||| |||||||||||    
T  4450305 ttgcatatattatgcattgtctttatcaactgagctaagctcacg 4450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 6833512 - 6833476
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6833512 ttatgcattgtctatatcaactgagctaagctcacga 6833476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 20744208 - 20744136
Alignment:
Q  100 ttgtggtcgggatttgaacccgc-actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||| |||||||||   || |||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  20744208 ttgtggtcggggtttgaaccccagaccttgcatatattatgcattgtccataccaactgagctaagctcacga 20744136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 26320567 - 26320631
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||| || |||||| | |||||||||||| ||| ||||||| |||||||||||| ||||    
T  26320567 tttgaacccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgatgaca 26320631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 24623310 - 24623385
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| ||||||||| | || || ||| |||||||||||||| ||||||||||| |||| ||||| ||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtccatatcaactgagctaaactcacaaagaca 24623385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 3274047 - 3273993
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacag 177  Q
    ||||| ||| |||||||||||||| ||||||| ||||||||||| |||| |||||    
T  3274047 actttacatatattatgcattgtccatatcaattgaactaagcttacgatgacag 3273993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 7927736 - 7927698
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  7927736 tattatgcattgtccctatcaactgaactaagctcacga 7927698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 9111090 - 9111040
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||| ||||    
T  9111090 ttgcatatattatgcattgttcataccaactgaactaagctcacgaggaca 9111040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 32053831 - 32053781
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  32053831 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 32053781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 33824924 - 33824874
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||  |||||||||| ||||| |||||||||||    
T  33824924 ttgcatatattatgcattgtccttatcaactgagctaagatcacgaagaca 33824874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 334183 - 334142
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctc 167  Q
    |||||| ||||||||||||||| |||||||||| ||||||||    
T  334183 ttgcatatattatgcattgtctttatcaactgagctaagctc 334142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 2044672 - 2044709
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  2044672 tattatgcattgtctataccaactgaactaaactcacg 2044709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 7081672 - 7081717
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||| ||||||| |||||||||| ||||||||||||    
T  7081672 ttgcatatattatgtattgtctttatcaactgagctaagctcacga 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 8637455 - 8637504
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| ||||||||||||||  || |||||||||||||||| |||||||    
T  8637455 ttgcatatattatgcattgtccctaccaactgaactaagctcgcgaagac 8637504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 13496183 - 13496114
Alignment:
Q  103 tggtcgggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||| ||||||| ||| || |||||| |||||||||||||  |||||||||||  |||||||||||    
T  13496183 tggtcggggtttgaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcacga 13496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 29069529 - 29069476
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||| ||| ||||||||||||||  |||||||||| |||||||||||| ||||    
T  29069529 acttttcatatattatgcattgtccctatcaactgagctaagctcacgatgaca 29069476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 33938673 - 33938742
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| ||| |||| |||||| || |||||| |||||||||||||  ||| ||||||| ||||||||||||    
T  33938673 gtggccggaatttaaacccgaaccttgcatatattatgcattgttcataccaactgagctaagctcacga 33938742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 788934 - 788858
Alignment:
Q  102 gtggtcgggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacag 177  Q
    ||||||||| ||||||| ||| || |||||| ||||||||||||||  || |||||||  ||||||||||| |||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgaggacag 788858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 13376354 - 13376310
Alignment:
Q  127 tgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  13376354 tgcatgtattatgcattgtccataccaattgagctaagctcacga 13376310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 25023688 - 25023648
Alignment:
Q  107 cgggatttgaacccgcactttgcatgtattatgcattgtct 147  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgtct 25023648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 32223894 - 32223942
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  32223894 actttgcatatattatgcattgtctctatcaactgaactaagctcacga 32223942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 13286198 - 13286124
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||| |||| |||||||||| |  |||||| |||||||||||||||||| ||||||| |||||||||||| ||||    
T  13286198 gtggccggggtttgaacccggatcttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 13286124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 27718887 - 27718957
Alignment:
Q  102 gtggtcgggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||  ||||||| ||| || |||||| |||||||||||||| ||||||||||| ||||||||||||    
T  27718887 gtggtcggagtttgaactccggaccttgcatatattatgcattgtccatatcaactgagctaagctcacga 27718957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 37938562 - 37938488
Alignment:
Q  103 tggtcgggatttgaacc-cgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||||||||| || ||||||||| ||||||||||| || ||| ||||||| |||| ||||||| ||||    
T  37938562 tggtcgggatttgaacctcggactttgcatatattatgcattatccataccaactgagctaaactcacgaggaca 37938488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 1877680 - 1877725
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||    
T  1877680 ttgcatatattatgcattgtctatatcaactgagttaagctcacga 1877725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 15310356 - 15310315
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  15310356 ttatgcattgtctatatcaactgagctaagctcacgaggaca 15310315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 15490725 - 15490684
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  15490725 ttatgcattgtctatatcaactgagctaagctcacgaggaca 15490684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 34997492 - 34997451
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  34997492 ttatgcattgtctatatcaactgagctaagctcacgaggaca 34997451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 574420 - 574384
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcac 169  Q
    |||||||||||||||||||||||||| ||||||||||    
T  574420 tattatgcattgtctatatcaactgagctaagctcac 574384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 8999884 - 8999960
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcatt-gtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| ||||||||| | ||||||||| ||||||||||| |||| || ||||||| |||||||||||| ||||    
T  8999884 gtggtcggggtttgaaccctggactttgcatatattatgcatttgtctctaccaactgagctaagctcacgaggaca 8999960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 6038300 - 6038343
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||    
T  6038300 tattatgcattgtccatatcaactgagctaagttcacgaagaca 6038343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 2958461 - 2958423
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  2958461 tattatgcattgtccataccaactgaactaagctcacga 2958423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 19163529 - 19163599
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| ||||||||| | || ||||||  ||||||||||||| ||| ||||||| ||||||||||||    
T  19163529 gtggtcggggtttgaaccccggaccttgcataaattatgcattgtccataccaactgagctaagctcacga 19163599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 30427788 - 30427726
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaaga 174  Q
    |||||||| | || |||||| |||||||||||||| ||| ||||||| |||||||||| ||||    
T  30427788 tttgaacctggaccttgcatatattatgcattgtccataccaactgagctaagctcacaaaga 30427726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 44293611 - 44293573
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  44293611 tattatgcattgtctataccaactgagctaagctcacga 44293573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 17062357 - 17062402
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||| ||||||||||||||||||  |||||||||||    
T  17062357 ttgcatatattatgtattgtctatatcaactgagttaagctcacga 17062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 17586001 - 17585956
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||| ||||||||||||||||||  |||||||||||    
T  17586001 ttgcatatattatgtattgtctatatcaactgagttaagctcacga 17585956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 20469329 - 20469374
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||| |||| ||||||| ||||||||||||    
T  20469329 ttgcatatattatgcattgtttataccaactgatctaagctcacga 20469374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 26914098 - 26914139
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||| |||| |||||| |||||||||||||||||||||||||    
T  26914098 ttatacattatctatagcaactgaactaagctcacgaagaca 26914139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 37015854 - 37015899
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||||| || ||||||| ||||||||||||    
T  37015854 ttgcatatattatgcattgtctctaccaactgagctaagctcacga 37015899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 37750009 - 37750062
Alignment:
Q  118 cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| ||||||||| |||||||||||||  ||||||||||| |||| |||||||    
T  37750009 cccggactttgcatatattatgcattgttcatatcaactgagctaaactcacga 37750062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 4830078 - 4830018
Alignment:
Q  100 ttgtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaa 159  Q
    |||||||||||||| |||||| | || |||||| |||||||||||||| ||| ||||||||    
T  4830078 ttgtggtcgggattcgaaccccgaaccttgcatatattatgcattgtccataccaactgaa 4830018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 7968940 - 7969000
Alignment:
Q  108 gggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    |||||||||||||| || |||||| ||||||||||||||  || |||||||| ||| ||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgtccttaccaactgaattaaactca 7969000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 10601806 - 10601762
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||| |||||||||||||| ||| |||||||| ||||||||||    
T  10601806 ttgcatatattatgcattgtccataccaactgaattaagctcacg 10601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 10871920 - 10871960
Alignment:
Q  134 attatgcattgtctatatcaactgaactaagctcacgaaga 174  Q
    ||||||||||||| ||| ||||| |||||||||||||||||    
T  10871920 attatgcattgtccataccaactaaactaagctcacgaaga 10871960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 44655028 - 44654992
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||| | ||||||||||||    
T  44655028 ttatgcattgtctatatcaactaagctaagctcacga 44654992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 13401665 - 13401591
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    ||||||||| ||||||||| | || || ||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtctctatcaactgaactaagctcacaaagac 13401591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 18166670 - 18166600
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| ||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||| |||||    
T  18166670 gtggtcggggtttgaaccccggactttgcatatattatgcattgtctataccaactgagctaagcccacga 18166600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 23309500 - 23309462
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23309500 tattatgcattgtctataccaactgaactaagctcacga 23309462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 45190287 - 45190337
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||||||||| |||||||||||    
T  45190287 ttgcatatattatgcattgtccataccaactgaactaagttcacgaagaca 45190337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 52441529 - 52441579
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||| ||||    
T  52441529 ttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 52441579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 3693787 - 3693864
Alignment:
Q  100 ttgtggtcgggatttgaacc-cgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||| |||||||| |  || || ||| |||||||| ||||||||||||||||| |||||||||||| ||||    
T  3693787 ttgtggtcggggtttgaacctcagaccttacatatattatgctttgtctatatcaactgagctaagctcacgaggaca 3693864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 16967212 - 16967261
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| |||||||||||||| ||||||||| | ||||||||||||||||    
T  16967212 ttgcatatattatgcattgtccatatcaactaagctaagctcacgaagac 16967261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 25533016 - 25532971
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||    
T  25533016 ttgcatatattatgcattgtccataccaactgaactaagctcacga 25532971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 6819000 - 6818936
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||  || |||||||||||||||||||| | |||||||||| | |||||||||| ||||    
T  6819000 tttgaacccagaccttgcatgtattatgcattgtttctatcaactgagcaaagctcacgaggaca 6818936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 13779621 - 13779583
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaag 164  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  13779621 ttgcatatattatgcattgtctatatcaactgagctaag 13779583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 15549262 - 15549300
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  15549262 tattatgcattgtctatatcaactgagctaagcttacga 15549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 27533311 - 27533241
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| ||||||||| | || |||||| ||||||||||||||  || ||||||| ||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctaccaactgatctaagctcacga 27533241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 32561043 - 32560973
Alignment:
Q  100 ttgtggtcgggatttgaa-cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcac 169  Q
    |||||||||||||||||| |||| || |||||| |||||| ||||||| ||| |||||||  |||||||||    
T  32561043 ttgtggtcgggatttgaaccccggaccttgcatatattatacattgtccataccaactgagataagctcac 32560973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 34632237 - 34632167
Alignment:
Q  102 gtggtcgggatttgaacc-cgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| ||||||||||||| || |  |||||| |||||| ||||||||||| ||||||| ||||||||||||    
T  34632237 gtggccgggatttgaacctcggatcttgcatatattatacattgtctataccaactgagctaagctcacga 34632167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 34766903 - 34766853
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||||| ||||||| ||| |||||||  ||||||||||||||||    
T  34766903 ttgcatgtattatacattgtccataccaactgagttaagctcacgaagaca 34766853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 42045390 - 42045440
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  42045390 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 925454 - 925487
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctca 168  Q
    |||||||||||| |||||||||||||||||||||    
T  925454 ttatgcattgtccatatcaactgaactaagctca 925487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 8253782 - 8253733
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||| |||||    
T  8253782 ttgcatatattatgcattgtccataccaactgagctaagctcacaaagac 8253733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 26755659 - 26755614
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||| |||||||||| ||||||||||| ||||||||||||    
T  26755659 ttgcatatataatgcattgtccatatcaactgagctaagctcacga 26755614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 26803461 - 26803514
Alignment:
Q  118 cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| ||||||||| |||||||||||||| ||| ||||||| ||||| ||||||    
T  26803461 cccggactttgcatatattatgcattgtccataccaactgagctaagttcacga 26803514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 27449463 - 27449508
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| |||| |||||| ||||||||||||    
T  27449463 ttgcatatattatgcattgtccatattaactgagctaagctcacga 27449508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 42267267 - 42267198
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||| | || || ||| ||||||   |||||| || ||||||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattatatgttgtctctaccaactgaactaagctcacga 42267198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 44641570 - 44641525
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||||||||||| |||| |||||||    
T  44641570 ttgcatatattatgcattgtccatatcaactgagctaaactcacga 44641525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 7308448 - 7308484
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  7308448 ttatgcattatctatatcaactgagctaagctcacga 7308484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 19262917 - 19262969
Alignment:
Q  118 cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||| ||||||||| | ||||||||||||  |||||||||| |||||||||||    
T  19262917 cccgaactttgcatatgttatgcattgtccttatcaactgagctaagctcacg 19262969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 28006809 - 28006753
Alignment:
Q  103 tggtcgggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactga 158  Q
    |||||||| ||| ||| ||| ||||||||| ||||||||||||||||||| ||||||    
T  28006809 tggtcggggtttaaactccggactttgcatatattatgcattgtctatattaactga 28006753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 45140024 - 45140068
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||    
T  45140024 ttgcatatattatgcattgtccataccaactgagctaagctcacg 45140068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 49196379 - 49196447
Alignment:
Q  102 gtggtcgggatttgaa-cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcac 169  Q
    |||||||||||||||| |||  ||||| ||| |||||||| ||||||||  ||||||| ||||||||||    
T  49196379 gtggtcgggatttgaaccccaaactttacatatattatgcgttgtctatggcaactgagctaagctcac 49196447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 35142164 - 35142217
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||    
T  35142164 actttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaca 35142217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 8683113 - 8683063
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||| ||||    
T  8683113 ttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 8683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 21136898 - 21136824
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||||||||||   || |||||| |||||| ||||||| ||| |||||||  ||||||||||||||||    
T  21136898 gtggtcgggatttgaacctcaaccttgcatatattatacattgtccataccaactgagttaagctcacgaagaca 21136824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 30781486 - 30781450
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30781486 ttatgcattgtctatatcaactgagctaagctcacga 30781450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 3953498 - 3953439
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||| || |||||| |||||||||||||| ||| | ||||| ||||||||||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgtccataccgactgagctaagctcacga 3953439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 20455172 - 20455129
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||| | |||||||||||||||||||| ||||    
T  20455172 tattatgcattgtctaaaccaactgaactaagctcacgaggaca 20455129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 20482240 - 20482205
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacg 170  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20482240 ttatgcactgtctatatcaactgaactaagctcacg 20482205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 45200237 - 45200194
Alignment:
Q  125 tttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||    
T  45200237 tttgcatgtattatgcattgtccatatcaactgagctaaactca 45200194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 27772071 - 27772033
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  27772071 tattatgcattgtctatgtcatctgaactaagctcacga 27772033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 39926556 - 39926606
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||  |||||||||| |||||||||||| ||||    
T  39926556 ttgcatatattatgcattgtccttatcaactgagctaagctcacgatgaca 39926606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 46207827 - 46207749
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacagaga 180  Q
    ||||| ||| |||||||||| || |||||| | |||||||||||  ||| ||||||| |||||||||||| ||| ||||    
T  46207827 gtggttggggtttgaacccggacattgcatattttatgcattgttcataccaactgagctaagctcacgaggaccgaga 46207749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 5317306 - 5317355
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| ||||||||||| || |||||||||||  |||||||||||||||    
T  5317306 ttgcatatattatgcattttccatatcaactgagttaagctcacgaagac 5317355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 8879765 - 8879810
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||||||| |||||||  |||||||||||    
T  8879765 ttgcatatattatgcattgtctataccaactgagttaagctcacga 8879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 10244770 - 10244725
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  10244770 ttgcatatattatgcattgtccataccaactgagctaagctcacga 10244725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 18773749 - 18773826
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    ||||||||| ||||||||| | || || ||| | |||||||||||| ||||||||||||||  |||||||| ||||||    
T  18773749 gtggtcggggtttgaaccccggaccttacatattttatgcattgtccatatcaactgaactgtgctcacgaggacaga 18773826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 25246814 - 25246769
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||||| |||||||||| |||| |||||||    
T  25246814 ttgcatatattatgcattgtctttatcaactgagctaaactcacga 25246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 32263053 - 32263000
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| || |||||| ||||||||||| ||||||| |||||||||||| ||||    
T  32263053 actttgtatatattatacattgtctataccaactgagctaagctcacgaggaca 32263000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 39801749 - 39801704
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  39801749 ttgcatatattatgcattgtccataccaactgagctaagctcacga 39801704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 1261221 - 1261173
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||| ||| |||||||| |||| ||||||||||||||||| |||||||    
T  1261221 actttacatatattatgctttgtttatatcaactgaactaaactcacga 1261173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 18684197 - 18684141
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactga 158  Q
    ||||||||| |||||||||| || ||||||  |||||||||| || |||||||||||    
T  18684197 gtggtcggggtttgaacccggaccttgcatacattatgcattatccatatcaactga 18684141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 20243291 - 20243247
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagacag 177  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||    
T  20243291 tattatgcattgtccataccaactgagctaagctcacgaggacag 20243247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 22780363 - 22780311
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    |||||| |||||| ||||||| ||| |||||||| |||||||||||| |||||    
T  22780363 ttgcatatattatacattgtccataccaactgaagtaagctcacgaatacaga 22780311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 43374263 - 43374335
Alignment:
Q  100 ttgtggtcgggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||| ||||||| ||| || |||||| | |||||||||||| ||||||||||| ||||||||||||    
T  43374263 ttgtggtcggggtttgaactccgaaccttgcatattttatgcattgtccatatcaactgagctaagctcacga 43374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 12698640 - 12698590
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| | ||||||||| |||||||||||||||||    
T  12698640 ttgcatatattatgcattgtccaaatcaactgagctaagctcacgaagaca 12698590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 26033318 - 26033268
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||| ||||    
T  26033318 ttgcatatattatgcattgtccatatcaactgaactaggctcacgaggaca 26033268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 30051885 - 30051935
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||| ||||    
T  30051885 ttgcatatattatgcattgtccataacaactgaactaagctcacgaggaca 30051935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 32180876 - 32180828
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| | |||||||||||||||| ||||||| ||||||||||||    
T  32180876 actttgcatattttatgcattgtctataccaactgagctaagctcacga 32180828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 11949756 - 11949823
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    ||||||||| ||||||||| | || |||||| |||||||||||||| ||| ||||||| |||||||||    
T  11949756 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctca 11949823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 36203279 - 36203228
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacag 177  Q
    |||||| ||||||||||||||  |||||||||| |||||||||||| |||||    
T  36203279 ttgcatatattatgcattgtccttatcaactgagctaagctcacgaggacag 36203228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 46056152 - 46056191
Alignment:
Q  137 atgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  46056152 atgcattgtttatatcaactgaactaagctcacaaagaca 46056191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 2186351 - 2186401
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  2186351 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 2186401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 9946495 - 9946425
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||| ||||||||| | || |||||| | |||||||||||| ||| ||||||| ||||||||||||    
T  9946495 gtggtcggggtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacga 9946425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 10497310 - 10497252
Alignment:
Q  118 cccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||| ||||||||| | |||||||||||| ||| ||| ||| |||||||||||||||||    
T  10497310 cccggactttgcatattttatgcattgtccataccaattgagctaagctcacgaagaca 10497252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 11286799 - 11286841
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    |||||| ||||||||||||||| || |||||||||||||||||    
T  11286799 ttgcatatattatgcattgtctctaccaactgaactaagctca 11286841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 14136127 - 14136089
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  14136127 tattatgcattgtctttatcaactgagctaagctcacga 14136089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 21317356 - 21317402
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaa 172  Q
    |||||| ||||||||||||||| || ||||||| |||||||||||||    
T  21317356 ttgcatatattatgcattgtctctaccaactgagctaagctcacgaa 21317402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 21623437 - 21623487
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||  || ||||||||||||| |||||||||||    
T  21623437 ttgcatatattatgcattgtccctaccaactgaactaagttcacgaagaca 21623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 23986452 - 23986502
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||| ||| |||||||||||||||  ||||||||||||||||    
T  23986452 ttgcatatattattcatcgtctatatcaactgagttaagctcacgaagaca 23986502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 44221490 - 44221440
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| |||||||| ||||||||||| ||||    
T  44221490 ttgcatatattatgcattgtccataccaactgaattaagctcacgatgaca 44221440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 49041974 - 49042044
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| |||| ||||||||| | || |||||| ||||||||||||||||||||||||   ||||||||||||    
T  49041974 gtggccggggtttgaaccccggaccttgcatatattatgcattgtctatatcaactaggctaagctcacga 49042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 52270048 - 52270098
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  52270048 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 52270098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 53142649 - 53142607
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    |||||| ||||||||||| |||||| |||||||||||||||||    
T  53142649 ttgcatatattatgcattatctatagcaactgaactaagctca 53142607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 16686197 - 16686238
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaaga 174  Q
    |||||||||||||| |||||||||||  ||||||||||||||    
T  16686197 tattatgcattgtccatatcaactgatttaagctcacgaaga 16686238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 24664984 - 24665061
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    ||||||||| || |||||| | || |||||| ||||||||||| || ||| ||||||| |||||||||||| ||||||    
T  24664984 gtggtcggggttcgaaccccggaccttgcatatattatgcattctccataccaactgagctaagctcacgaggacaga 24665061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 38352798 - 38352761
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacg 170  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  38352798 tattaagcattgtctatatcaactgagctaagctcacg 38352761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 39171388 - 39171433
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||    
T  39171388 ttgcatattttatgcattgtccatatcaactgagctaagctcacga 39171433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 43155122 - 43155073
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| ||||||||||| || ||| ||||||| ||||||||||||||||    
T  43155122 ttgcatatattatgcattatccataacaactgagctaagctcacgaagac 43155073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 43627293 - 43627330
Alignment:
Q  134 attatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  43627293 attatgcaatgtctatatcaactgaactaaactcacga 43627330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 7030911 - 7030963
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    |||||| | |||||||||||||||| |||||||  ||||||||||| ||||||    
T  7030911 ttgcatattttatgcattgtctataccaactgagttaagctcacgaggacaga 7030963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 10401389 - 10401465
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacag 177  Q
    |||||| |||||||||||| | || |||||| |  ||||||||||  ||| |||||||||||||||||||| |||||    
T  10401389 gtggtcaggatttgaaccctggaccttgcatattgtatgcattgttcataccaactgaactaagctcacgaggacag 10401465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 19479470 - 19479538
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcac 169  Q
    ||||||||| ||||||||| | || |||||| |||||||||||||  |||| |||||| ||||||||||    
T  19479470 gtggtcggggtttgaaccccggaccttgcatatattatgcattgttcatattaactgagctaagctcac 19479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 29099708 - 29099768
Alignment:
Q  108 gggatttgaacccgc-actttgcatgtatt-atgcattgtctatatcaactgaactaagct 166  Q
    |||||| |||||||| || |||||| |||| |||||||||||||||||||||| |||||||    
T  29099708 gggattcgaacccgcgaccttgcatatatttatgcattgtctatatcaactgagctaagct 29099768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 29681475 - 29681523
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaaga 174  Q
    |||||| | |||||||||||| ||| |||||||||||||||||| ||||    
T  29681475 ttgcatattttatgcattgtccataccaactgaactaagctcacaaaga 29681523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 17789 - 17730
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||| || ||||||||||||||||||||| ||| ||||||| |||| |||||||    
T  17789 tttgaacccggaccttgcatgtattatgcattgtccataccaactgagctaaactcacga 17730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 529225 - 529178
Alignment:
Q  124 ctttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  529225 ctttgcatatattatgcattgtcgataccaactgaactaagctcacga 529178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 7868789 - 7868720
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||| |||| ||||||| ||||||||| |||||||||||||   || ||||||| ||||||||||||    
T  7868789 gtggtcgagattcgaacccgaactttgcatatattatgcattgttcttaccaactgagctaagctcacga 7868720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 54113374 - 54113333
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  54113374 ttatgcattgtctatatcaactgagctaagctcacgatgaca 54113333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 43777060 - 43777124
Alignment:
Q  112 tttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||| || |||||| |||||||||| |||  || ||||||| |||||||||||||||||    
T  43777060 tttgaacccgaaccttgcatatattatgcatggtccctaccaactgagctaagctcacgaagaca 43777124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 48315015 - 48315087
Alignment:
Q  100 ttgtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||||||||||||||| | || |||||| ||||||||||| ||  || ||||||| ||||||||||||    
T  48315015 ttgtggtcgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgagctaagctcacga 48315087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 12131698 - 12131741
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||    
T  12131698 tattatgcattgtctataccaattgaactaagctcacaaagaca 12131741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 16980347 - 16980422
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||||||||||  | || |||||| ||||||||||||||  || ||||||| |||||||||||| ||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 16980422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 10498713 - 10498763
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  10498713 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 10498763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 16792992 - 16793042
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||||||| ||||||  |||||||||||| ||||    
T  16792992 ttgcatatattatgcattgtctataccaactgtgctaagctcacgaggaca 16793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 21331435 - 21331485
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  21331435 ttgcatatattatgcattgtccataacaactgagctaagctcacgaggaca 21331485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 43011365 - 43011315
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||| ||||||||||||||||||  || |||||||| ||||    
T  43011365 ttgcatgtattatgtattgtctatatcaactgagttaggctcacgaggaca 43011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 49088819 - 49088745
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||| |||| |  || || ||| | ||||||||||| |||||||||||| |||| ||||||||||||    
T  49088819 gtggtcgggattcgaactcaaaccttacatattttatgcattgtttatatcaactgagctaaactcacgaagaca 49088745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 50570207 - 50570249
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctca 168  Q
    |||||| |||||||||||||||||| ||||||| |||||||||    
T  50570207 ttgcatatattatgcattgtctataccaactgagctaagctca 50570249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 8139758 - 8139713
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||| ||||||||||||||    
T  8139758 ttgcatatattatgcattgtccataccaactaaactaagctcacga 8139713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 8942084 - 8942011
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| ||||| ||| ||  ||||||||| |||||||||||||  ||| |||||||  |||||||||||||||    
T  8942084 gtggtcaggattcgaatccagactttgcatatattatgcattgttcataccaactgagttaagctcacgaagac 8942011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 20296340 - 20296287
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| |||||||||||||| || | ||||||| ||||||||||| ||||    
T  20296340 actttgcatatattatgcattgtccatgttaactgaattaagctcacgaggaca 20296287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 20370299 - 20370344
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| | |||||||||||| ||||||||||| ||||||||||||    
T  20370299 ttgcatattttatgcattgtccatatcaactgagctaagctcacga 20370344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 21549081 - 21549032
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| |||||| ||||||| ||||||||||| ||||||| ||||||||    
T  21549081 ttgcatatattatacattgtccatatcaactgagctaagcttacgaagac 21549032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 37413531 - 37413490
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||| |||||||||||||||||| |||||||||||| ||||    
T  37413531 ttatgaattgtctatatcaactgagctaagctcacgaggaca 37413490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 38388015 - 38387970
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||||  |||||||||| ||||||||||||    
T  38388015 ttgcatatattatgcattgtcactatcaactgagctaagctcacga 38387970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 43316628 - 43316669
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  43316628 ttatgcattatctatatcaactgagctaagctcacgaggaca 43316669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 47039495 - 47039426
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||||||||| |||||| | ||||||||| ||||||||||||||  ||||| ||||  ||||||||||    
T  47039495 gtggtcgggattcgaaccccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacg 47039426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 48961103 - 48961050
Alignment:
Q  115 gaacccgc-actttgcatgtatt-atgcattgtctatatcaactgaactaagct 166  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||| |||||||    
T  48961103 gaacccgcgactttgcatatatttatgcattgtctatatcaactgagctaagct 48961050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 51402731 - 51402768
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaa 163  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  51402731 ttgcatgtattatgcattgtccatatcaactgagctaa 51402768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 977941 - 978009
Alignment:
Q  109 ggatttgaac-ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||| ||| || |||||| |||||||||||||| ||| ||||||| ||||||| ||| |||||    
T  977941 ggatttgaactccggaccttgcatatattatgcattgtccataccaactgagctaagcttacgtagaca 978009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 1149087 - 1149139
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    |||||| ||||||||||||||  || ||||||| |||||||||||| ||||||    
T  1149087 ttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaga 1149139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 24428488 - 24428532
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctc 167  Q
    ||||||||| |||||||||||||| ||| ||||||| ||||||||    
T  24428488 actttgcatatattatgcattgtccataccaactgagctaagctc 24428532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 44579679 - 44579627
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacaga 178  Q
    |||||| | |||||||||||| ||| ||||||| |||||||||||| ||||||    
T  44579679 ttgcatattttatgcattgtccataccaactgagctaagctcacgaggacaga 44579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 22571866 - 22571933
Alignment:
Q  110 gatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||||| | || |||||| |||||||||||||||||||||||||| ||||| |||||| ||||    
T  22571866 gatttgaaccccggacattgcatatattatgcattgtctatatcaactgagctaagttcacgaggaca 22571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 33064029 - 33063979
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| ||||    
T  33064029 ttgcatatattatgcattgtccatatcaactgagctaagctcacgaggaca 33063979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 23359130 - 23359171
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  23359130 ttatgcattgtctataccaactgaactaagctcacgaggaca 23359171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 3113721 - 3113785
Alignment:
Q  103 tggtcgggatttgaa-cccgcactttgcatgtattatgcattgtctatatcaactgaactaagct 166  Q
    ||||||||||||||| |||| || |||||| | ||||||||||||  ||||||||||||||||||    
T  3113721 tggtcgggatttgaatcccggaccttgcatattttatgcattgtccttatcaactgaactaagct 3113785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 40896524 - 40896572
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| || |||||||||||||||||| ||||||| ||||||||||||    
T  40896524 actttgtatatattatgcattgtctataccaactgagctaagctcacga 40896572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 22523005 - 22523080
Alignment:
Q  102 gtggtcgggatttgaacc-cgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||| ||||||||||||| || || |||||| ||||||| |||||| ||| ||||||| |||||||||||| ||||    
T  22523005 gtggccgggatttgaacctcgaaccttgcatatattatgtattgtccataccaactgagctaagctcacgaggaca 22523080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 29734758 - 29734691
Alignment:
Q  103 tggtcgggatttgaacc-cgcactttgcatgtattatgcattgtctatatcaactgaactaagctcac 169  Q
    |||||||| |||||||| || || |||||| |||||||||||||| ||||||||||| |||| |||||    
T  29734758 tggtcggggtttgaaccacggaccttgcatatattatgcattgtccatatcaactgagctaaactcac 29734691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 3197073 - 3197147
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||||||| |||||| ||| || |||||| ||||||||||||||  || ||||||| |||| ||||||| ||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtccctaccaactgagctaaactcacgaggaca 3197147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 5842154 - 5842200
Alignment:
Q  129 catgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    ||||||||||| |||||| ||||||||| | ||||||||||||||||    
T  5842154 catgtattatgtattgtccatatcaacttagctaagctcacgaagac 5842200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 7206168 - 7206118
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||| || ||||||| |||||||||||| ||||    
T  7206168 ttgcatatattatgcattgtctctaccaactgagctaagctcacgaggaca 7206118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 7350614 - 7350544
Alignment:
Q  102 gtggtcgggatttgaacccgc-actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||   ||||||||| |||||||||||||| ||| ||||||| ||||||| ||||    
T  7350614 gtggtcaggatttgaaccctagactttgcatatattatgcattgtccataccaactgagctaagcttacga 7350544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 26999153 - 26999103
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||| || ||||||||||||| |||||| ||||    
T  26999153 ttgcatatattatgcattgtctctaccaactgaactaagttcacgaggaca 26999103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 27244700 - 27244650
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||  |||||||||| |||||||||||| ||||    
T  27244700 ttgcatatattatgcattgtccctatcaactgagctaagctcacgaggaca 27244650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 44694731 - 44694681
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| ||||||||||||||||||||||||||  |||| |||||| ||||    
T  44694731 ttgcatatattatgcattgtctatatcaactgagttaagttcacgaggaca 44694681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 1861827 - 1861872
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  1861827 ttgcatatattatgcattgtccatatcagctgagctaagctcacga 1861872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 9383227 - 9383272
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  9383227 ttgcatatattatgcattgtccataccaactgagctaagctcacga 9383272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 9459082 - 9459119
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacg 170  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  9459082 tattatgcattgtctttatcaactgagctaagctcacg 9459119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 9519732 - 9519777
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  9519732 ttgcatatattatgcattgtccatatcaattgagctaagctcacga 9519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 10195680 - 10195725
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||| || ||||||||||| ||||||||||||    
T  10195680 ttgcatatattatgcattatccatatcaactgagctaagctcacga 10195725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 22608570 - 22608525
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| ||||||||||||||| || ||||||| ||||||||||||    
T  22608570 ttgcatatattatgcattgtctctaccaactgagctaagctcacga 22608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 23756755 - 23756706
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| | ||||| |||||||||||||||||| ||||||| ||||||||    
T  23756755 ttgcatattttatgtattgtctatatcaactgagctaagcttacgaagac 23756706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 24305323 - 24305372
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagac 175  Q
    |||||| | |||||||||||| |||| |||||| ||||||||||||||||    
T  24305323 ttgcatattttatgcattgtccatattaactgagctaagctcacgaagac 24305372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 25186260 - 25186305
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||||||||||| |||| |||||||    
T  25186260 ttgcatatattatgcattgtccatatcaactgagctaaactcacga 25186305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 35820319 - 35820364
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||  || ||||||| ||||||||||||    
T  35820319 ttgcatgtattatgcattgtccctaccaactgagctaagctcacga 35820364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 34444099 - 34444051
Alignment:
Q  123 actttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| || |||||||||||||||||| |||||||| ||| |||||||    
T  34444099 actttgtatatattatgcattgtctataccaactgaaataaactcacga 34444051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 36264472 - 36264540
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcac 169  Q
    ||||||||| ||||||||| | ||||||||| ||||||||||| || ||| ||| |||| |||||||||    
T  36264472 gtggtcggggtttgaaccccgaactttgcatatattatgcattatccataccaattgaattaagctcac 36264540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 39068726 - 39068770
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||| ||||||||||||||  |||||||||| |||||||||||    
T  39068726 ttgcatatattatgcattgtccttatcaactgagctaagctcacg 39068770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 42714473 - 42714437
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  42714473 ttatgcattgtccataccaactgaactaagctcacga 42714437  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 19248522 - 19248472
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||||||| ||||||| |||||||||||| ||||    
T  19248522 ttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 19248472  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 39610359 - 39610404
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||||    
T  39610359 ttgcatatattatgcattgtccatatcaactgagctaagctcacga 39610404  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 4573075 - 4573122
Alignment:
Q  124 ctttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| | |||||||||||||| ||| ||||||||||||||||||||    
T  4573075 ctttgcttatattatgcattgtccataccaactgaactaagctcacga 4573122  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 8839491 - 8839448
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  8839491 tattatgcattgtctataccaactgaacttagctcacgaggaca 8839448  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 30488961 - 30488918
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||  |||||||||||||||||||||||| ||||    
T  30488961 tattatgcattgttcatatcaactgaactaagctcacgatgaca 30488918  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 34436894 - 34436839
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagacagagac 181  Q
    |||||| ||||||||||||||  || ||||||| |||||||||||| |||||||||    
T  34436894 ttgcatatattatgcattgtccctaccaactgagctaagctcacgaggacagagac 34436839  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 37932373 - 37932323
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||| ||||    
T  37932373 ttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 37932323  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 40715942 - 40716012
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||| |||| ||||||||| | || |||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  40715942 gtggccggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacga 40716012  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 10531582 - 10531533
Alignment:
Q  127 tgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    ||||| |||||||||||||| ||| ||||| |||||||||||||| ||||    
T  10531582 tgcatatattatgcattgtccatagcaactaaactaagctcacgaggaca 10531533  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 13220619 - 13220688
Alignment:
Q  107 cgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||| |||||||||| ||||||| | |||||||||| |||  || ||||||| |||||||||||| ||||    
T  13220619 cggggtttgaacccgaactttgcgtatattatgcatcgtccttaccaactgagctaagctcacgaggaca 13220688  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 17151860 - 17151905
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||| |||||||| || ||||||||||||||||||||    
T  17151860 ttgcatatattatacattgtctctagcaactgaactaagctcacga 17151905  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 22394071 - 22394034
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  22394071 tattatgcattgtccatatcaactgagctaagctcacg 22394034  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 25603993 - 25604062
Alignment:
Q  102 gtggtcgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||| ||||||| |||||| | || |||||| ||||||||| |||| ||||||||||| |||||||||||    
T  25603993 gtggccgggattcgaaccccgaaccttgcatatattatgcactgtccatatcaactgagctaagctcacg 25604062  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 41650933 - 41651002
Alignment:
Q  102 gtggtcgggatttgaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||||  ||||||| || || |||||| |||||||||||||| ||| |||||||  |||||||||||    
T  41650933 gtggtcggtgtttgaactcggaccttgcatatattatgcattgtccataccaactgagttaagctcacga 41651002  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 42505922 - 42505865
Alignment:
Q  119 ccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| ||||    
T  42505922 ccgcaccttgcatatattatgcattgtccataccaactgagctaagcttacgaggaca 42505865  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 13880230 - 13880194
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13880230 ttatgtattgtccatatcaactgaactaagctcacga 13880194  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 24485753 - 24485697
Alignment:
Q  115 gaacccgcactttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    ||||||| || |||||| |||||||||||||| ||| ||||| | ||||||||||||    
T  24485753 gaacccgaaccttgcatatattatgcattgtccataccaactaagctaagctcacga 24485697  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 27679561 - 27679497
Alignment:
Q  107 cgggatttgaaccc-gcactttgcatgtattatgcattgtctatatcaactgaactaagctcacg 170  Q
    |||||||||||||| | || |||||| ||||||||||| ||| || ||||||| |||||||||||    
T  27679561 cgggatttgaaccccgaaccttgcatatattatgcattatctttaccaactgagctaagctcacg 27679497  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 37438554 - 37438590
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  37438554 ttatgcattgtctataccaattgaactaagctcacga 37438590  T

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Target: scaffold0768 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 6416 - 6452
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6416 ttatgcattgtctatatcaactgagctaagctcacga 6452  T

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Target: scaffold0350 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 1284 - 1241
Alignment:
Q  133 tattatgcattgtctatatcaactgaactaagctcacgaagaca 176  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||    
T  1284 tattatgcattgtccatatcaactgagctaagttcacgaagaca 1241  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 40041 - 39996
Alignment:
Q  126 ttgcatgtattatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  40041 ttgcatatattatgcattgtccataccaactgagctaagctcacga 39996  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 21782 - 21818
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21782 ttatgcattgtctataccaactgagctaagctcacga 21818  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 244513 - 244477
Alignment:
Q  135 ttatgcattgtctatatcaactgaactaagctcacga 171  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  244513 ttatgcattgtccatatcaactgagctaagctcacga 244477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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