View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_45 (Length: 370)
Name: NF4125_low_45
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 2 - 354
Target Start/End: Original strand, 341316 - 341668
Alignment:
| Q |
2 |
gaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaa |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341316 |
gaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaa |
341415 |
T |
|
| Q |
102 |
gtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttctaagaga |
201 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341416 |
gtgatgatgctcatcatgttgatatgttaacggcattgattagagaagaaaaaaacaagggtagtgaaagtgaagcacttggtgacaagtttctaagaga |
341515 |
T |
|
| Q |
202 |
tgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagccaag |
301 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
341516 |
tgctgcattcaatctctttgtagctggaagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagccaag |
341615 |
T |
|
| Q |
302 |
attcttgaagagatcaaagaaaatttcggatacaaagagaagccttggatttt |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
341616 |
attcttgaagagatcaaagaaaatttcggatacaaagagaagccttggatttt |
341668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 337281 - 337630
Alignment:
| Q |
5 |
gcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaagtg |
104 |
Q |
| |
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|||||||| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||| | ||||| |
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| T |
337281 |
gcatgcaaagtatttgatcaattcctatattcgtgtatagcttcaaaatgcgaagagctaaagaaaaacggtaacaaaaatgaaattaatggtcaaagta |
337380 |
T |
|
| Q |
105 |
atgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttctaagagatgc |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
337381 |
atgatgctcatcatgttgatttgctaacggcattaattagagaagaaaatagcaagggtagtgaaagtgaatcaattggtaacaagtttctaagagatgc |
337480 |
T |
|
| Q |
205 |
tgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagccaagatt |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
337481 |
tgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttattttatcttgtcgctacacatcctttggtggaagccaagatt |
337580 |
T |
|
| Q |
305 |
cttgaagagatcaaagaaaatttcggatacaaagagaagccttggatttt |
354 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
337581 |
gttgaagagataaaagaaaattttggacacaaagagaagccttggatttt |
337630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 333024 - 333326
Alignment:
| Q |
2 |
gaggcatgcaaggtatttgatcaattcctcttttcgtgtattgcttcaaagcgcgaagagctaaagaaaaattgtaacaaaaatgaaatcaatgctgaaa |
101 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
333024 |
gaggcatgcaaagtatttgataaattcctattttcgtgtatagcttcaaagcgcgaagagctaaagcaaaattgtaacaaaaatgaaatcaatgttgaaa |
333123 |
T |
|
| Q |
102 |
gtgatgatgctcatcatgttgatatgctaacggcgttgattagagaagnnnnnnncaagggtagtgaaagtgaagcacttggtgacaagtttctaagaga |
201 |
Q |
| |
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|||| |||||||||||||||||| |||| ||| ||||||||||||||| |||| ||||||||||||| || || ||||||||||||||||| |
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| T |
333124 |
gtgacgatgctcatcatgttgatttgcttacgacgttgattagagaagaaaaaaataaggatagtgaaagtgaatcaattatcgacaagtttctaagaga |
333223 |
T |
|
| Q |
202 |
tgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagccaag |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||| |||||||| ||||| |||||||||||| |
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|
| T |
333224 |
tgctgcattcaatctctttgtagcggggagagataccataacttccgcccttacatggttattttatcttgtcgctacacatcctttggtggaagccaag |
333323 |
T |
|
| Q |
302 |
att |
304 |
Q |
| |
|
||| |
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|
| T |
333324 |
att |
333326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 185 - 327
Target Start/End: Original strand, 377212 - 377354
Alignment:
| Q |
185 |
gacaagtttctaagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacacc |
284 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||| ||||||||||| | |
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|
| T |
377212 |
gacaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttattttatctcgttgctacacatc |
377311 |
T |
|
| Q |
285 |
ctttagtggaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| |||||| |||| |
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|
| T |
377312 |
ctttagtagaaaccaagattcttgaagagattaaagaacattt |
377354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 188 - 327
Target Start/End: Complemental strand, 347284 - 347145
Alignment:
| Q |
188 |
aagtttctaagagatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctt |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || |||||| ||||||||||||||| |
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|
| T |
347284 |
aagtttctaagagatgtcgcattcaatctttttgtagccgggagagatactataacttcagcgcttacatggcttttatatcttattgctacacaccctt |
347185 |
T |
|
| Q |
288 |
tagtggaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
||||||| || ||||||||||| |||| ||||||||||| |
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| T |
347184 |
tagtggaggctaagattcttgagcagattaaagaaaattt |
347145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 355931 - 355804
Alignment:
| Q |
200 |
gatgctgcattcaatctctttgtagctgggagagataccataacttctgcgcttacatggctattttatcttgttgctacacaccctttagtggaagcca |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||||||||| || | |
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|
| T |
355931 |
gatgttgcattcaatctctttgtagcggggagagatactataacttcagcgcttacatggctcttctatctcattgctacacaccctttagtggaggcta |
355832 |
T |
|
| Q |
300 |
agattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |
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|
| T |
355831 |
agattcttgaggagattaaagaaaattt |
355804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 12176155 - 12176106
Alignment:
| Q |
278 |
acacaccctttagtggaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12176155 |
acacacccttttgttgaagccaagattcttgaagagatcaaagaaaattt |
12176106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 12164615 - 12164581
Alignment:
| Q |
293 |
gaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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|
| T |
12164615 |
gaagctaagattcttgaagagatcaaagaaaattt |
12164581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 3321385 - 3321431
Alignment:
| Q |
281 |
caccctttagtggaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3321385 |
cacccttttgttgaagctaagattcttgaagagattaaagaaaattt |
3321431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 36668485 - 36668436
Alignment:
| Q |
278 |
acacaccctttagtggaagccaagattcttgaagagatcaaagaaaattt |
327 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||| | | ||||||||| |
|
|
| T |
36668485 |
acacacccttttgttgaagccaagattcttgaagaggtgagagaaaattt |
36668436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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