View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_5 (Length: 805)

Name: NF4125_low_5
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_5
NF4125_low_5
[»] chr7 (14 HSPs)
chr7 (1-684)||(17809398-17810091)
chr7 (272-525)||(17812816-17813066)
chr7 (54-96)||(5715299-5715341)
chr7 (54-96)||(44944927-44944969)
chr7 (43-88)||(4574488-4574533)
chr7 (54-96)||(8303426-8303468)
chr7 (54-96)||(21846503-21846545)
chr7 (54-96)||(22687742-22687784)
chr7 (43-89)||(26281376-26281422)
chr7 (43-96)||(5058538-5058591)
chr7 (51-96)||(8630033-8630078)
chr7 (43-96)||(9685311-9685364)
chr7 (43-96)||(11326395-11326448)
chr7 (43-88)||(26617543-26617588)
[»] chr6 (10 HSPs)
chr6 (43-96)||(10958254-10958307)
chr6 (43-96)||(6943527-6943580)
chr6 (45-96)||(15528179-15528230)
chr6 (54-96)||(17543818-17543860)
chr6 (43-96)||(7918448-7918501)
chr6 (43-96)||(8545032-8545085)
chr6 (54-96)||(7223528-7223570)
chr6 (55-97)||(8285802-8285844)
chr6 (43-96)||(17250066-17250119)
chr6 (43-96)||(30912479-30912532)
[»] chr2 (4 HSPs)
chr2 (43-95)||(24473346-24473398)
chr2 (54-96)||(27750230-27750272)
chr2 (54-96)||(35566032-35566074)
chr2 (43-96)||(15516626-15516679)
[»] chr8 (5 HSPs)
chr8 (43-98)||(15294677-15294732)
chr8 (43-98)||(15475046-15475101)
chr8 (43-89)||(17647009-17647055)
chr8 (58-96)||(23136358-23136396)
chr8 (43-96)||(5922058-5922111)
[»] chr4 (8 HSPs)
chr4 (54-96)||(5362041-5362083)
chr4 (43-81)||(27527709-27527747)
chr4 (53-96)||(9149812-9149855)
chr4 (55-96)||(5846458-5846499)
chr4 (43-96)||(7044736-7044789)
chr4 (43-96)||(8011283-8011336)
chr4 (43-96)||(13551689-13551742)
chr4 (43-96)||(24719526-24719579)
[»] chr3 (4 HSPs)
chr3 (54-96)||(3449369-3449411)
chr3 (43-96)||(29067293-29067346)
chr3 (54-96)||(20767539-20767581)
chr3 (43-96)||(28745779-28745832)
[»] chr5 (7 HSPs)
chr5 (43-96)||(13350127-13350180)
chr5 (43-96)||(43234877-43234930)
chr5 (43-102)||(18843719-18843777)
chr5 (54-96)||(23172510-23172552)
chr5 (43-96)||(13342054-13342106)
chr5 (43-96)||(20923727-20923780)
chr5 (43-96)||(22645786-22645839)
[»] chr1 (7 HSPs)
chr1 (43-88)||(19010013-19010058)
chr1 (54-88)||(16125536-16125570)
chr1 (43-96)||(9352130-9352183)
chr1 (43-96)||(9955102-9955155)
chr1 (43-96)||(21846335-21846388)
chr1 (43-88)||(25146835-25146880)
chr1 (43-96)||(30619084-30619137)


Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Original strand, 17809398 - 17810091
Alignment:
Q  1 gtaggtttggtccattttgaacggaaggaaacgatcgtacggtgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttttaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17809398 gtaggtttggtccattttgaacggaaggaaacgatcgtacggtgaaggtgagtaaagtcacaaaatcctgaattttgggatttaagtcgcgatttttaac 17809497  T
Q  101 aatgatggttacatgctcannnnnnncattaagaagatactaaatatggatacatctcttaaccgggattcaaaccagttcaccacgttatgcgagtcta 200  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17809498 aatgatggttacatgctcatttttttcattaagaagatactaaatatggatacatctcttaaccgggattcaaaccagttcaccacgttatgcgagtcta 17809597  T
Q  201 agccctccccattggcacatggtcatgatttctatcgctcacattttccttaagggaaatagaagaacactagaacaatcacttttaacagcactataaa 300  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17809598 agctctccccattggcacatggtcatgatttttatcgctcacattttccttaagggaaatagaagaacaatagaacaatca-ttttaacagcactataaa 17809696  T
Q  301 ttgtcggaattaaatggttttcaaaagacccacatctctaaggactacctattcatataccacttatagaccacaatgtgagaaaggaaacataagtgtt 400  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||| |||||| |||||||||||||||||||||||    
T  17809697 ttgtcggaattaaatggttttcaaaagacccacacctctaaggactacatattcatatagcacttgtaggccacaacgtgagaaaggaaacataagtgtt 17809796  T
Q  401 tcaactaaagtgaacttgtccataatgtgcagtaaaagagaatctcatttaacctctttgatctgacctatcacaagtacaatataacccattcatataa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17809797 tcaactaaagtgaacttgtccataatgtgcagtaaaagagaatctcatttaacatctttgatctgacctatcacaagtacaatataacccattcatataa 17809896  T
Q  501 ctaaaacaaaatattagagagttgcagtagaagggaaat----------gagtaaattggtaatcttttaagaataatattttctctgcaaaactatttt 590  Q
    |||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  17809897 ctaaaacaaaatattagagagttgcactagaagggaaatcaaatcattagagtaaattggtaatcttttaagaatactatttgctctgcaaaaccatttt 17809996  T
Q  591 atgaatgtnnnnnnng-gtacaaaacaggaaacctattgcaacagattgttcattgtattcctatcattaacattttctacaggtaaaccacaca 684  Q
    |||||||        | |||| ||||||| ||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  17809997 atgaatgcaaaaaaagagtaccaaacaggcaacctcttgcaacagattgttcattgtattcccatcatttacatcttctacaggtaaaccacaca 17810091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 272 - 525
Target Start/End: Original strand, 17812816 - 17813066
Alignment:
Q  272 agaacaatcacttttaacagcactataaattgtcggaattaaatggttttcaaaagacccacatctctaaggact-acctattcatataccact--ta-- 366  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||  ||||||| || |||  |||||||| | ||||||||||||||||||  ||      
T  17812816 agaacaattacttttaacatcactataaattgtcggaattgaatggtcatcaaaaggcctaca--tctaaggagtaacctattcatataccactcctagc 17812913  T
Q  367 tagaccacaat------gtgagaaaggaaacataagtgtttcaactaaagtgaacttgtccataatgtgcagtaaaagagaatctcatttaacctctttg 460  Q
    ||| |||||||      ||||||||||||| ||||| |||||||||||||| || | || ||||||||| |||| ||  |||||||||      | ||||    
T  17812914 taggccacaatatacacgtgagaaaggaaaaataagagtttcaactaaagtaaagtagttcataatgtgtagtagaaaggaatctcat------tatttg 17813007  T
Q  461 atctgacctatcacaagtacaatataacccattcatat-aactaaaacaaaatattagagagttgc 525  Q
    |||||       ||  ||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  17813008 atctg-------actggtacaatataatccattcatataaactaaaacaaaatattagagagttgc 17813066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 5715341 - 5715299
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  5715341 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 5715299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 44944927 - 44944969
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  44944927 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 44944969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 4574533 - 4574488
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtc 88  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||    
T  4574533 tgaaggtgagtaaagtcgcaaaattctggattttaggatttaagtc 4574488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 8303468 - 8303426
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  8303468 aaagtcgcaaaaacctgaattttgagacttaagtcgcgatttt 8303426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 21846503 - 21846545
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| | |||||||||| ||||||    
T  21846503 aaagtcgcaaaatcctgaattttagaatttaagtcgggatttt 21846545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 22687742 - 22687784
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||    
T  22687742 aaagtcgcaaattcctgaattttaggatttaagtcgggatttt 22687784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 26281376 - 26281422
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcg 89  Q
    |||||||||  |||||||||||||||||||||||  |||||||||||    
T  26281376 tgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcg 26281422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 5058591 - 5058538
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||| ||||||||| ||||||||| |||||||||||| ||||||    
T  5058591 tgaaggtgaagaaaatcgcaaaattctgaattttaggatttaagtcgggatttt 5058538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 8630033 - 8630078
Alignment:
Q  51 agtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||| ||||||||||  ||||||||| |||||||||||||||    
T  8630033 agtaaagttgcaaaatcctagattttgggacttaagtcgcgatttt 8630078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 9685311 - 9685364
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||| ||||||| ||||||    
T  9685311 tgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagatttt 9685364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 11326448 - 11326395
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||||||||| | ||||||    
T  11326448 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 11326395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 26617543 - 26617588
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtc 88  Q
    |||||||||  ||||||||||||||||||||||| ||||| |||||    
T  26617543 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggattaaagtc 26617588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 10958254 - 10958307
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10958254 tgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgatttt 10958307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 6943527 - 6943580
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||| ||||||    
T  6943527 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 6943580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 15528179 - 15528230
Alignment:
Q  45 aaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||  ||||||||||||||||||||||| |||||||||||| ||||||    
T  15528179 aaggtgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 15528230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 17543818 - 17543860
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  17543818 aaagtcgcaaaatcctgaattttaggatttaagtcgagatttt 17543860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 7918448 - 7918501
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||||||||| | |||||||||| ||||||    
T  7918448 tgaaggtgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggatttt 7918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 8545032 - 8545085
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||| |||||||||||||||||||||| |||||| |||||||| ||| ||||||    
T  8545032 tgaaagtgagtaaagtcgcaaaatcctaaattttaggatttaaatcgggatttt 8545085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 7223570 - 7223528
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||| |||||| |||||||||||| ||||||    
T  7223570 aaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 7223528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 8285802 - 8285844
Alignment:
Q  55 aagtcgcaaaatcctgaattttgggatttaagtcgcgattttt 97  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||    
T  8285802 aagtcgcaaaatcctggattttaggacttaagtcgcgattttt 8285844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 17250119 - 17250066
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||| ||||||||||| ||||| |||||||||||| ||||||    
T  17250119 tgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggatttt 17250066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 30912479 - 30912532
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||||||||| | ||||||    
T  30912479 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 30912532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 24473398 - 24473346
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgattt 95  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  24473398 tgaaggtgagtaaaatcgcaaaatcctgaattttgggacttaagtcacgattt 24473346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 27750230 - 27750272
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||| || ||||||||| |||||||||||||||    
T  27750230 aaagtcgcaaaatcttgtattttgggacttaagtcgcgatttt 27750272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 35566032 - 35566074
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||||||||||| ||||||||| | ||||||    
T  35566032 aaagtcgcaaaatcctgaattttgtgatttaagttgggatttt 35566074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 15516626 - 15516679
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||| |||||||||||||| |||||| ||  ||||||||| ||||||||    
T  15516626 tgaaggtgaataaagtcgcaaaatgctgaatattaagatttaagttgcgatttt 15516679  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 15294732 - 15294677
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgattttta 98  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||    
T  15294732 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggattttta 15294677  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 15475101 - 15475046
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgattttta 98  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||    
T  15475101 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggattttta 15475046  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 17647055 - 17647009
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcg 89  Q
    |||||||||  |||||||||||||||||||||||  |||||||||||    
T  17647055 tgaaggtgaagaaagtcgcaaaatcctgaattttatgatttaagtcg 17647009  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 23136396 - 23136358
Alignment:
Q  58 tcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  23136396 tcgcaaaatcctgaattttaggatttaagtcgggatttt 23136358  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 5922111 - 5922058
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||| |||||||||| ||||| |||||||||||| ||||||    
T  5922111 tgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcgggatttt 5922058  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 5362041 - 5362083
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  5362041 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 5362083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 27527747 - 27527709
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggat 81  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27527747 tgaaggtgagtaaagttgcaaaatcctgaattttgggat 27527709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 9149812 - 9149855
Alignment:
Q  53 taaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||    
T  9149812 taaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 9149855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 5846458 - 5846499
Alignment:
Q  55 aagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||| |||||| ||||||||||| ||||||    
T  5846458 aagtcgcaaaatcctggattttgagatttaagtcgtgatttt 5846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 7044789 - 7044736
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||| |||||| |||||||| || ||||| |||||||||||| ||||||    
T  7044789 tgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggatttt 7044736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 8011283 - 8011336
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||||||||| |||||| ||| | ||||||    
T  8011283 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttgagttgggatttt 8011336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 13551689 - 13551742
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||| ||||||| ||||||    
T  13551689 tgaaggtgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagatttt 13551742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 24719579 - 24719526
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||| ||||||||||||||| |||||||| | | |||||||| ||||||    
T  24719579 tgaaggtgaataaagtcgcaaaatcttgaattttagaaattaagtcgagatttt 24719526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 3449369 - 3449411
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  3449369 aaagtcgcaaaatcctgaattttaggatttaagtcgggatttt 3449411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 29067346 - 29067293
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||||||||| | |||||||||| ||||||    
T  29067346 tgaaggtgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggatttt 29067293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 20767539 - 20767581
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    ||||| |||||| |||||||||||||| |||||||||||||||    
T  20767539 aaagttgcaaaaacctgaattttgggacttaagtcgcgatttt 20767581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 28745832 - 28745779
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||||||| ||| ||||||    
T  28745832 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggatttt 28745779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 13350127 - 13350180
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||| |||||||| || |||||||||||||||| | ||||||    
T  13350127 tgaaggtgagtaaagttgcaaaatcttggattttgggatttaagttgtgatttt 13350180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 43234930 - 43234877
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||||||||| |||||||||| | ||||||    
T  43234930 tgaaggtgaagaaagtcgcaaaatcctgaattttaggatttaagttgggatttt 43234877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 18843777 - 18843719
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttttaacaa 102  Q
    |||||||||  ||||||||||||||||||||| | |||||||||||| || |||||||||    
T  18843777 tgaaggtgaagaaagtcgcaaaatcctgaattataggatttaagtcg-gaattttaacaa 18843719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 23172510 - 23172552
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||| |||||| |||||||||||| ||||||    
T  23172510 aaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 23172552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 13342054 - 13342106
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||||||||||  ||||||||| |||||| ||||||| ||||||||||    
T  13342054 tgaaggtgagtaaagtc-aaaaatcctggattttgcgatttaaatcgcgatttt 13342106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 20923780 - 20923727
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||| ||| ||||| |||||||||||| ||||||    
T  20923780 tgaaggtgaagaaagtcgcaaaattctggattttaggatttaagtcgggatttt 20923727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 22645786 - 22645839
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||| ||| ||||| |||||||||||| ||||||    
T  22645786 tgaaggtgaagaaagtcgcaaaatactggattttaggatttaagtcgggatttt 22645839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 19010013 - 19010058
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtc 88  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||    
T  19010013 tgaaggtgaaaaaagtcgcaaaatcctgaattttaggatttaagtc 19010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 16125536 - 16125570
Alignment:
Q  54 aaagtcgcaaaatcctgaattttgggatttaagtc 88  Q
    ||||||||||||||||||||||| |||||||||||    
T  16125536 aaagtcgcaaaatcctgaattttaggatttaagtc 16125570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 9352130 - 9352183
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||| |||| ||||| |||||||||||| ||||||    
T  9352130 tgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggatttt 9352183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 9955102 - 9955155
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  |||||||||||||||| |||||| |||||||||| | ||||||    
T  9955102 tgaaggtgaagaaagtcgcaaaatcctaaattttaggatttaagttgggatttt 9955155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 21846335 - 21846388
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||||||||||||||||| ||||| |||||||| ||| ||||||    
T  21846335 tgaaggtgaaaaaagtcgcaaaatcctggattttaggatttaactcgggatttt 21846388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 25146835 - 25146880
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtc 88  Q
    |||||||||  ||||||||||||| ||||||||| |||||||||||    
T  25146835 tgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtc 25146880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 30619137 - 30619084
Alignment:
Q  43 tgaaggtgagtaaagtcgcaaaatcctgaattttgggatttaagtcgcgatttt 96  Q
    |||||||||  ||| ||||||||||||| ||||| |||||||||||| ||||||    
T  30619137 tgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggatttt 30619084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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