View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_53 (Length: 343)
Name: NF4125_low_53
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 3113099 - 3112784
Alignment:
| Q |
21 |
cgaaaaactcaaataaacaaagcaattatatatggtataaaataagtaatgactacacaagttctgttccaggatagagatataatcccaggccccaagt |
120 |
Q |
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| T |
3113099 |
cgaaaaactcaaataaacaaagcaattatatatggtataaaataagtaatgactacacaagttctgttccaggatagagatataatcccaggccccaagt |
3113000 |
T |
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| Q |
121 |
ttgattgtacaggctaaggttcataattaaacgctcatacaaaagacatgttctcttnnnnnnncacgagacgcgttctcctttggcttttaaaacaaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
3112999 |
ttgattgtacaggctaaggttcataattaaacgctcatacaaaagacatgttctcttaaaaaaacacgagacacgttctcctttggcttttaaaacaaaa |
3112900 |
T |
|
| Q |
221 |
gccttcaggtttaggtctaaaaaatccatatcctttgtcttctaggttttccccttctttctgcaatgcaggaccattaggtcatcttttgggatcagca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3112899 |
gccttcaggtttaggtctaaaaaatccatatcctttgtcttctaggttttccccttctttctgcaatgcaggaccattaggtcatcttttgggatcagca |
3112800 |
T |
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| Q |
321 |
aatatccttcatctca |
336 |
Q |
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|||||||||||||||| |
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| T |
3112799 |
aatatccttcatctca |
3112784 |
T |
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