View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_54 (Length: 340)
Name: NF4125_low_54
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_54 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 35638935 - 35639257
Alignment:
| Q |
18 |
tattgctcccatttgcccagatgttttccaattcatcacattaatatttaattattaaagagccacccaatcatttgccatgnnnnnnngacattgcact |
117 |
Q |
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| T |
35638935 |
tattgctcccatttgcccaaatattttccaattcatcacattaatatttaattattaaagagccacccaatcatttgacatgtttttttgaccttgcact |
35639034 |
T |
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| Q |
118 |
aacatgacaagtaaccaccatgatatttgccaagtgaactatgagaacccaattgaaaccttagttacactagagtaacaaaaggtgtattttcaacagg |
217 |
Q |
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| T |
35639035 |
aacatgacaagtaaccaccatgatatttgccaagtgaactatgagaacccaattgaaaccttagttacactagagtaacaaaaggtgtattttcaacagg |
35639134 |
T |
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| Q |
218 |
gaaccaagaacttactcgttgtctagctgttacattaaacttttgaagcaaaaatgctttaggatccatttgtccaggaggcttcccaatccctgtcaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35639135 |
aaaccaagaacttactcgttgtctagctgttacattaaacttttgaagcaaaaatgctttaggatccatttgtccaggaggcttcccaatccctgtcaac |
35639234 |
T |
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| Q |
318 |
aaaacaaattgaaaataacaatc |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
35639235 |
aaaacaaattgaaaataacaatc |
35639257 |
T |
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