View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_58 (Length: 331)
Name: NF4125_low_58
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 100 - 319
Target Start/End: Original strand, 37183599 - 37183818
Alignment:
| Q |
100 |
gccactgtcaactgacactgatgacgtaaaattccaccattatcatcaaaactccattatcgtcaattcaccaccaccaccgctatggagggtggaaaca |
199 |
Q |
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| T |
37183599 |
gccactgtcaactgacactgatgacgtaaaattccaccattatcatcaaaactccattatcgtcaattcaccaccaccaccgctatggagggtggaaaca |
37183698 |
T |
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| Q |
200 |
gagctgaagctgaacggtggctttacaccgccaacaaactcctaagcgcacgtgatctgcacggtgcacgctccttcgcgatccgtgcccgagaatccga |
299 |
Q |
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| T |
37183699 |
gagctgaagctgaacggtggctttacaccgccaacaaactcctaagcgcacgtgatctgcacggtgcacgctccttcgcgatccgtgcccgagaatccga |
37183798 |
T |
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| Q |
300 |
cccaaccttcgacgcctctg |
319 |
Q |
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| T |
37183799 |
cccaaccttcgacgcctctg |
37183818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37183528 - 37183578
Alignment:
| Q |
19 |
gtcatcaacagcacaatcccaataaaaccccaattcaccacaattaccaaa |
69 |
Q |
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| T |
37183528 |
gtcatcaacagcacaatcccaataaaaccccaattcaccacaattaccaaa |
37183578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 1950698 - 1950592
Alignment:
| Q |
196 |
aacagagctgaagctgaacggtggctttacaccgccaacaaactcctaagcgcacgtgatctgcacggtgcacgctccttcgcgatccgtgcccgagaat |
295 |
Q |
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| T |
1950698 |
aacagaggtgaagctgaacgatggttatacacagccaacaaactactcagcgcgcgtgacttacacggcgcccgttccttcgccattcgggcacaagaat |
1950599 |
T |
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| Q |
296 |
ccgaccc |
302 |
Q |
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||||||| |
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| T |
1950598 |
ccgaccc |
1950592 |
T |
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