View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_60 (Length: 319)

Name: NF4125_low_60
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_60
NF4125_low_60
[»] chr8 (4 HSPs)
chr8 (1-308)||(39087432-39087738)
chr8 (111-186)||(8361216-8361291)
chr8 (111-186)||(25091397-25091472)
chr8 (113-177)||(4931099-4931162)
[»] scaffold0229 (1 HSPs)
scaffold0229 (111-186)||(25493-25568)
[»] chr7 (3 HSPs)
chr7 (111-186)||(12976995-12977070)
chr7 (111-186)||(12982453-12982528)
chr7 (111-186)||(18293104-18293179)
[»] chr6 (3 HSPs)
chr6 (111-186)||(4849804-4849879)
chr6 (113-180)||(15873527-15873594)
chr6 (126-180)||(21057853-21057907)
[»] chr4 (2 HSPs)
chr4 (113-180)||(13915871-13915938)
chr4 (111-186)||(14249866-14249941)
[»] chr1 (1 HSPs)
chr1 (111-186)||(1365185-1365260)
[»] chr3 (2 HSPs)
chr3 (111-186)||(38357066-38357141)
chr3 (113-180)||(35684505-35684572)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 39087432 - 39087738
Alignment:
Q  1 ttactctaaagatgataaatattataatgtaatctatattacagaatatgtaaaccaaaacagggaacaacaagaggggggatgttttggaaatgttagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087432 ttactctaaagatgataaatattataatgtaatctatattacagaatatgtaaaccaaaacagggaacaacaagaggggggatgttttggaaatgttagc 39087531  T
Q  101 cgcacaaaaaagatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgcgcttcctggctggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39087532 cgcacaaaaaagatgtacacgggcggacgttaatggaacttctctggcattg-aaaatcatggatcaattgcaataggtgtaatgcgcttcctggctggc 39087630  T
Q  201 ttatttgagatgggtgtgctctttgaactggacgattgattccctaccttttgtgctgcctcagattttatgctgcccgaagttgattgtggtttatctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087631 ttatttgagatgggtgtgctctttgaactggacgattgattccctaccttttgtgctgcctcagattttatgctgcccgaagttgattgtggtttatctg 39087730  T
Q  301 ccttctct 308  Q
    ||||||||    
T  39087731 ccttctct 39087738  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 8361216 - 8361291
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  8361216 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 8361291  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 25091397 - 25091472
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  25091397 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 25091472  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 4931099 - 4931162
Alignment:
Q  113 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaatag 177  Q
    |||||||| ||| ||||||||||||| |||| ||| ||||||| ||||| || ||||||||||||    
T  4931099 atgtacacaggctgacgttaatggaatttctatggtattgaaatatcat-gaccaattgcaatag 4931162  T

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Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 25568 - 25493
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||| |||||||||| || |||||| ||||||||| ||||| || ||||||||||||||| |||||    
T  25568 agatgtacacaggctgacgttaatgaaatttctcttgcattgaaatatcattgaccaattgcaataggtgcaatgc 25493  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 12977070 - 12976995
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  12977070 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 12976995  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 12982528 - 12982453
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  12982528 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 12982453  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 18293104 - 18293179
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||  ||||||| ||||| |||| ||||||||||| ||||| || |||||||||| |||| |||||    
T  18293104 agatgtacacaggatgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaatgggtgcaatgc 18293179  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 4849879 - 4849804
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||| ||||||| ||||| |||| ||||||||||| ||||| || ||||||||||||||| |||||    
T  4849879 agatgtacacaggctgacgttagtggaatttctatggcattgaaatatcattgaccaattgcaataggtgcaatgc 4849804  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 15873594 - 15873527
Alignment:
Q  113 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 180  Q
    |||||||| ||| ||||||||||||| || | ||||||||||| ||||| || |||||||||||||||    
T  15873594 atgtacacaggctgacgttaatggaatttttatggcattgaaatatcattgaccaattgcaataggtg 15873527  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 21057853 - 21057907
Alignment:
Q  126 gacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 180  Q
    ||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||    
T  21057853 gacgttaatggaatttctatggcattgaaatatcattgaccaattgcaataggtg 21057907  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 13915938 - 13915871
Alignment:
Q  113 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 180  Q
    |||||||| ||| ||||||||||||| |||| ||||||||||| ||||| || |||||||||||||||    
T  13915938 atgtacacaggctgacgttaatggaatttctatggcattgaaatatcattgaccaattgcaataggtg 13915871  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 14249941 - 14249866
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  14249941 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 14249866  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 1365185 - 1365260
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    |||||||||| ||| |||||||||| || |||||| ||||||||| ||||| || ||||||||||||||| |||||    
T  1365185 agatgtacacaggctgacgttaatgaaatttctcttgcattgaaatatcattgaccaattgcaataggtgcaatgc 1365260  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 38357066 - 38357141
Alignment:
Q  111 agatgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtgtaatgc 186  Q
    ||||||||||  || ||||||||||||| |||| ||||||||||| || || || ||||||||||||||| |||||    
T  38357066 agatgtacacaagctgacgttaatggaatttctatggcattgaaatataattgaccaattgcaataggtgcaatgc 38357141  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 35684572 - 35684505
Alignment:
Q  113 atgtacacgggcggacgttaatggaacttctctggcattgaaaaatcatggatcaattgcaataggtg 180  Q
    ||||||||  || ||||||||||||| |||| ||| ||||||| ||||| || |||||||||||||||    
T  35684572 atgtacacatgctgacgttaatggaatttctatggtattgaaatatcattgaccaattgcaataggtg 35684505  T

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