View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_63 (Length: 301)
Name: NF4125_low_63
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_63 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 58 - 301
Target Start/End: Complemental strand, 15664786 - 15664545
Alignment:
| Q |
58 |
ctaatataaaatggtacaattatgctttcgtattacattaatctagaaaaaaggccccaatgatattaaatatctttaccgtgtcttgctatctaagttg |
157 |
Q |
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| T |
15664786 |
ctaacataaaatggtacaattatgctttcgtattacattaatctagaaaaaaggccccaatgatattaaatatctttaccgtgtcttgctatctaagttg |
15664687 |
T |
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| Q |
158 |
cacttagaagactttttaatctaaatataactattgaaatttgaaatacagttgcattgaaaattttgttaatattattgtgttataagtgactttatga |
257 |
Q |
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| T |
15664686 |
cacttagaagactttataatctaa--ataactattgaaatttgaaatacagttgcattgaaaattttgttaatattattgcgttataagtgactttatga |
15664589 |
T |
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| Q |
258 |
aatatgtgttaaacctgaaacggacaggggcaacaaagatatac |
301 |
Q |
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| T |
15664588 |
aatatgtgttaaacctgaaacggacaggggcaacaaagatatac |
15664545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 60 - 261
Target Start/End: Complemental strand, 27361 - 27171
Alignment:
| Q |
60 |
aatataaaatggtacaattatgctttcgtattacattaatctagaaaaaaggccccaatgatattaaatatctttaccgtgtcttgctatctaagttgca |
159 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| | |
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| T |
27361 |
aatataaaatggtgcaattatgccttcgtattacattaatctagaaaaaaggccccaatgatattaaatatatttacagtgttttgcttactaagttgta |
27262 |
T |
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| Q |
160 |
cttagaagactttttaatctaaatataactattgaaatttgaaatacagttgcattgaaaattttgttaatattattgtgttataagtgactttatgaaa |
259 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||| || |
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| T |
27261 |
cttagaagactttttaatctaaattcaactattgaa-----------agttacattgaaaattttgttaatattattacgttataactgactttatggaa |
27173 |
T |
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