View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_65 (Length: 295)
Name: NF4125_low_65
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 49426138 - 49425870
Alignment:
| Q |
17 |
aaaatgtgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatactgctatgagaatgagaagggagcttttgaactgtcttaatga |
116 |
Q |
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| T |
49426138 |
aaaatgtgtgagaactgagaactgacttctaaaatgtctgataagttttgaaaaatactgctatgagaatgagaagggagcttttgaactgtcttaatga |
49426039 |
T |
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| Q |
117 |
atcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttcatagtttcaactttcaagacatt |
216 |
Q |
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| T |
49426038 |
atcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttcatagtttcaactttcaagacatt |
49425939 |
T |
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| Q |
217 |
agggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgttacaacttcat |
285 |
Q |
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| T |
49425938 |
agggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgttacaacttcat |
49425870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 43363144 - 43363344
Alignment:
| Q |
80 |
tgagaatgagaagggagcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaat |
179 |
Q |
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| T |
43363144 |
tgagaatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--at |
43363241 |
T |
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| Q |
180 |
gtatgagatggttcatagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttcgccaattcatattggcaatgtcatgttacaa |
279 |
Q |
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| T |
43363242 |
gtaggagatgattaatagattcaactttcaagacataagggataacattt-ttatgctcttaagctttcaccattgcacatttgcaa--tcatgttacaa |
43363338 |
T |
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| Q |
280 |
cttcat |
285 |
Q |
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|||||| |
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| T |
43363339 |
cttcat |
43363344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 49423904 - 49423713
Alignment:
| Q |
95 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
194 |
Q |
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| T |
49423904 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagttggagatggttga |
49423805 |
T |
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| Q |
195 |
tagtttcaactttcaagacattagggatagcatttcttacgctcttaagatttc-gccaattcatattggcaatgtcatgttacaacttcat |
285 |
Q |
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| T |
49423804 |
tagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttgcaatatcacgttacaacttcat |
49423713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 49416720 - 49416802
Alignment:
| Q |
23 |
tgtgagaactgagaactgacttctaaaatgtctgataa-gttttgaaaaatactgctatgagaatgagaagggagcttttgaa |
104 |
Q |
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||||||||||||| ||| |||||||| | |||| |||| ||||| ||||||||||| |||||||||| ||||||||||||||| |
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| T |
49416720 |
tgtgagaactgagtactcacttctaataagtctaataaagttttaaaaaatactgcaatgagaatgacaagggagcttttgaa |
49416802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 17641049 - 17640994
Alignment:
| Q |
168 |
tttaaactaaatgtatgagatggttcatagtttcaactttcaagacattagggata |
223 |
Q |
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||||||||||||||| || |||||| |||| |||||||||||||| ||||||||| |
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| T |
17641049 |
tttaaactaaatgtaggacatggttgatagattcaactttcaagaatttagggata |
17640994 |
T |
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