View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_66 (Length: 288)
Name: NF4125_low_66
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 40442494 - 40442766
Alignment:
| Q |
1 |
cttagtgctgcaatcaaatttgcaaaataaaaatgcaggatctgaatatagttgtaaaattaattcataaatcttaccactaactcaatgtaagaactga |
100 |
Q |
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| T |
40442494 |
cttagtgctgcaatcaaatttgcaaaataaaaatgcaggatctgaatatagttgtaaaattaattcataaatcttaccactaactcaatgtaagaactga |
40442593 |
T |
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| Q |
101 |
atgacaacttttaccaattttgagcgaatggttagaacaaataatatgttaatattcacttgtacttttatccttgtggtatttatatgatttctatgca |
200 |
Q |
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| T |
40442594 |
atgacaacttttaccaattttgagcgaatggttagaacaaataatatgttaatattcacttgtacttttatccttgtggtatttatatgatttctatgca |
40442693 |
T |
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| Q |
201 |
aaatagttattgagatattttaatatcaaagtgtggttatgtgcaaaatgatgcaagctttggcggagaaact |
273 |
Q |
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| T |
40442694 |
aaatagttattgagatattttaatatcaaagtgtggttatgtgcataatgatgcaagctttggcggagaaact |
40442766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 29445062 - 29444964
Alignment:
| Q |
163 |
tacttttatccttgtggtatttatatgatttctatgcaaaatagttattgagatattttaatatcaaagtgtggttatgtgcaaaatgatgcaagctttg |
262 |
Q |
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| T |
29445062 |
tacttttatccttgtggta-ttatatga-ttcaatgcaaaatatcttttgagatactataatatagaagtgttgctatgtgcagaatgctacaagctttg |
29444965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 29475248 - 29475196
Alignment:
| Q |
60 |
ttaattcataaatcttaccactaactcaatgtaagaactgaatgacaactttta |
113 |
Q |
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| T |
29475248 |
ttaattcataa-tcttacatctaactcaatgtcagaactgaatgacaattttta |
29475196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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