View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_69 (Length: 267)
Name: NF4125_low_69
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_69 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 3635065 - 3634815
Alignment:
| Q |
7 |
ttttttattataaagagggtcgaagcccaggaaagaaaaactacaaaagaactaaacgagggatggtaatcccccaaaacatcagctgtcaacaaatgac |
106 |
Q |
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| T |
3635065 |
ttttttattataaagagggtcgaagcccaggaaagaaaaacta-aaaagaactaaacgagggatggtaatcccccaaaacatcagctgtcaacaaatgac |
3634967 |
T |
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| Q |
107 |
taaactacgacagactcgcatcaaacaacacaagattagaatccaaggagcctccgagatttgttaatgcatccgcacactgatttgtatcccgataagt |
206 |
Q |
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| T |
3634966 |
taaactacgacggactcgcatcaaacaacacaagattggaatccaaggagcctccgagatttgctaatgcatccgcacactgatttgtatcccgataagt |
3634867 |
T |
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| Q |
207 |
atgattaacgactacttcccaatccatatccaacatccttcaaatcttcatc |
258 |
Q |
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| T |
3634866 |
atgattaacgactacttcccaatccatatccaacatccttcaaatcttcatc |
3634815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 12511702 - 12511449
Alignment:
| Q |
2 |
ttttattttttattataaagagggtcgaagcccaggaaagaaaaactacaaaagaactaaacgagggatggtaatcccccaaaacatcagctgtcaacaa |
101 |
Q |
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| T |
12511702 |
tttttttttatattacaaagagggtcgaagctcaagaaagaaa--ctacaaagggactaaacgaggaatgataatcccc-aaatcatccgtggccaacta |
12511606 |
T |
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| Q |
102 |
atgactaaactacgacagactcgcatcaaacaacacaagattagaatccaaggagcctccgagatttgttaatgcatccgcacactgatttgtatcccga |
201 |
Q |
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| T |
12511605 |
ataactaaactgcggcagacacgcatcaaacaacacaagattggaatccaaggaacctatgagatttgttaatgcatctgcacattgatttacctcccga |
12511506 |
T |
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| Q |
202 |
taagtatgattaacgactacttcccaatccatatccaacatccttcaaatcttcatc |
258 |
Q |
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| T |
12511505 |
taagtatgatgaacaatcacttcccaatccatatccaacatccttcgaatcttcatc |
12511449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 10417640 - 10417495
Alignment:
| Q |
7 |
ttttttattataaagagggtcgaagcccaggaaagaaaaactacaaaagaactaaacgagggatggtaatcccccaaaacatcagctgtcaacaaat-ga |
105 |
Q |
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| T |
10417640 |
ttttttattacaataagggtcgaagcctaggaaagaaaagttatatatgaactaaatgaggggtattaatcccc-aaaacattagctgccaacaaattga |
10417542 |
T |
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| Q |
106 |
ctaaactacgacagactcgcatcaaacaacacaagattagaatccaa |
152 |
Q |
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| T |
10417541 |
ctaaattgcggcgtacacgcatcaaacaacacaagattggaatccaa |
10417495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 10417424 - 10417388
Alignment:
| Q |
222 |
ttcccaatccatatccaacatccttcaaatcttcatc |
258 |
Q |
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| T |
10417424 |
ttcccaatccatatccaacatctttcgaatcttcatc |
10417388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 75477 - 75625
Alignment:
| Q |
11 |
ttattataaagagggtcgaagcccag-gaaagaaaaactacaaaagaactaaacgag-ggatggtaatcccccaaaacatcagctgtcaacaaatgacta |
108 |
Q |
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||||||||||||||||||||||| | ||||||||| |||| |||||| |||||||| || | || |||| ||||||||| | | ||||||||||||| |
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| T |
75477 |
ttattataaagagggtcgaagcctggagaaagaaaa-ctacgaaagaattaaacgagagggtagttatcctt-aaaacatcaaccgccaacaaatgacta |
75574 |
T |
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| Q |
109 |
aactacgacagactcgcatcaaacaacacaagattagaatccaaggagcct |
159 |
Q |
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| T |
75575 |
aactatagcggacacacatcaaataacacgagattagaatccaaagagcct |
75625 |
T |
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