View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4125_low_7 (Length: 717)
Name: NF4125_low_7
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 314 - 542
Target Start/End: Original strand, 7577870 - 7578098
Alignment:
| Q |
314 |
tctcctacattcatcttctccaatgcatcgaagtttctttttaagatagatgcgggaattgaagccattattaaaggagaagagattgatgtatggagat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7577870 |
tctcctacattcatcttctccaatgcatcgaagtttctttttaagatagatgcgggaattcaagccattattaaaggagaagagattgatgtatggagat |
7577969 |
T |
|
| Q |
414 |
gtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaannnnnnnnnaatgataaattttagtatatttg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7577970 |
gtgatcagtgataccatcgcccaaacataaaatgataccaagaagggtttgacaattggctattgtaatttttttttaatgataaattttagtatatttg |
7578069 |
T |
|
| Q |
514 |
ttaattagtatgttaaggactttaaccat |
542 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
7578070 |
ttaattagtatgttaaggacttaaaccat |
7578098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 534 - 700
Target Start/End: Original strand, 7579387 - 7579563
Alignment:
| Q |
534 |
tttaaccattcagatatacacaaaactgtaagagctaaataaa----------ttaaattattaacatgtttaaattgagatgataatgtttaaattacc |
623 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7579387 |
tttaaccatacagatatacacaaaactgtaagagctaaataaattaaattaaattaaattattaacatgtttaaattgatatgataatgtttaaattacc |
7579486 |
T |
|
| Q |
624 |
atgttcaagaaacgtagaccgagaaaaggaccaaaagcttgaacataagtttttctctttcaaggaaggttgaacat |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7579487 |
atgttcaagaaacgtagaccgagaaaaggaccaaaaggttgaacataagtttttctctttcaaggaaggttgaacat |
7579563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 20075875 - 20076093
Alignment:
| Q |
3 |
cattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagaca |
102 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20075875 |
cattgataagagatcaacgacaggaggaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagata |
20075974 |
T |
|
| Q |
103 |
ataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataaccaactataaaaaga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
20075975 |
ataactaacttccttgaatataggaaagttaggcagtgatgtagtgtagctagtacatgttagtcttatagtgcagtagcaataaccaactat-aaaaga |
20076073 |
T |
|
| Q |
203 |
caattttgtaactaacttca |
222 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
20076074 |
caattctataactaacttca |
20076093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 20079001 - 20079219
Alignment:
| Q |
3 |
cattgataagagatcaacaatagaaggaacacagtagtcctcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagaca |
102 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20079001 |
cattgataagagatcaacaataggacgaacacagtggtcttcaattgcttgcaccacaagttacagaagccaagcactagtgaagagttagttagagata |
20079100 |
T |
|
| Q |
103 |
ataactaacttccttgaatataggaaagttgggcagtgttctagtgtagatagtacatattagtcttacagtgcagtagcaataaccaactataaaaaga |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| | ||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
20079101 |
ataagtaacttccttgaatataggaaagttaggcagtgatgcagtgtagctagtacatgttagtcttatagtgcagtagcaataaccaactat-aaaaga |
20079199 |
T |
|
| Q |
203 |
caattttgtaactaacttca |
222 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
20079200 |
caattctgtaactaacttca |
20079219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University