View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_74 (Length: 249)
Name: NF4125_low_74
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 9911410 - 9911556
Alignment:
| Q |
7 |
gttggtcctctatctcttctcctccaaaactatcgcaaccgtggtagtggctcgagcagtggtaatggctaacattgatatggatatggttaaaataagt |
106 |
Q |
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| T |
9911410 |
gttggtcctctatctcttctcctccaaaactatcgcaacggtgctagtggctcgagcagtggcaatggccaacattgatatggatatggttaaaataagt |
9911509 |
T |
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| Q |
107 |
tgtgcttaaaacttcatgaattggtggcgttgaaagtatgttggttc |
153 |
Q |
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| T |
9911510 |
tgtgcttaaaacttcatgaattggtggcgttgaaagtatgttggttc |
9911556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 9921695 - 9921768
Alignment:
| Q |
85 |
tatggatatggttaaaataagttgtgcttaaaacttcatgaattggtg-gcgttgaaagtatgttggttccttc |
157 |
Q |
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| T |
9921695 |
tatggatatggttaaattaagttgtgcttaaaacttcataaattggtgctatttgaaagtatgttagttccttc |
9921768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 9921486 - 9921525
Alignment:
| Q |
7 |
gttggtcctctatctcttctcctccaaaactatcgcaacc |
46 |
Q |
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| T |
9921486 |
gttggtcctctatctcttctcctccaaaactatcgcaacc |
9921525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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