View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_75 (Length: 246)
Name: NF4125_low_75
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 44668564 - 44668354
Alignment:
| Q |
18 |
agaatgaagtgcataagtgcataattaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagt |
117 |
Q |
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| T |
44668564 |
agaatgaagtgcataagtgcataatgaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagt |
44668465 |
T |
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| Q |
118 |
tgtttttgagaagcctttagattgtgagtttattcgaaaatggaatttagcttatgaaggagatattgcacatgtggtggtgatgcagcacgtaactgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44668464 |
tgtttttgagaagcctttagattgtgagtttattcgaaaatggaatctagcttatgaaggagatattgcacatgtggtggtgatgcagcacgttactgtt |
44668365 |
T |
|
| Q |
218 |
gaaatgttgga |
228 |
Q |
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||||||||||| |
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| T |
44668364 |
gaaatgttgga |
44668354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 44640249 - 44640041
Alignment:
| Q |
20 |
aatgaagtgcataagtgcataattaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttg |
119 |
Q |
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|||||||||||||| ||||| || |||||| ||||| | || | |||||||| |||||||| ||| | |||||||| ||||||| |||||| ||||||| |
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| T |
44640249 |
aatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttg |
44640150 |
T |
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| Q |
120 |
tttttgagaagcctttagattgtgagtttattcgaaaatggaatttagcttatgaaggagatattgcacatgtggtggtgatgcagcacgtaactgttga |
219 |
Q |
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|||||||||||||||| ||| ||||||||||||||| |||| |||||| ||| ||||| ||||||||||||||||||||||||| || || ||| |||| |
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| T |
44640149 |
tttttgagaagcctttggatattgagtttattcgaaagtggagtttagcatatcaaggaaatattgcacatgtggtggtgatgcaacatgttactattga |
44640050 |
T |
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| Q |
220 |
aatgttgga |
228 |
Q |
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| T |
44640049 |
aatgttgga |
44640041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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