View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4125_low_76 (Length: 240)
Name: NF4125_low_76
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4125_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 31309370 - 31309586
Alignment:
| Q |
10 |
acatcatcaaacccataaacctcatcgaacactgccgaaatcttcaatttgtcgccgccgccgaatttcaccacctgctatcgtattttcaaagtaaccc |
109 |
Q |
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| T |
31309370 |
acatcatcaaacccataaacctcatcgaacactgccgaaatcttcaatttgtcgccgccgccgaatttcagcacctgctatcgtattttcaaagtaaccc |
31309469 |
T |
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| Q |
110 |
ttctctttatccttcacaatttctgttatattctttgtactgttgttccactaacccatcaattatttgtttattattggatttggagatatatttatgt |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31309470 |
ttctctttatccttcacaatttctgttattttctttgtactgttgttccactgacccatcaattatttgtttattattggatttggagatatatttatgt |
31309569 |
T |
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| Q |
210 |
ttgtctataaacttatt |
226 |
Q |
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|||||||| |||||||| |
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| T |
31309570 |
ttgtctatgaacttatt |
31309586 |
T |
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