View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4125_low_9 (Length: 692)

Name: NF4125_low_9
Description: NF4125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4125_low_9
NF4125_low_9
[»] chr4 (3 HSPs)
chr4 (158-685)||(43813171-43813698)
chr4 (19-160)||(43813731-43813876)
chr4 (589-685)||(43989258-43989354)
[»] chr1 (4 HSPs)
chr1 (587-685)||(21515216-21515314)
chr1 (589-659)||(2536508-2536578)
chr1 (589-685)||(11351597-11351693)
chr1 (589-654)||(44839888-44839953)
[»] chr3 (4 HSPs)
chr3 (589-685)||(36684920-36685016)
chr3 (589-685)||(8705727-8705823)
chr3 (589-685)||(9057614-9057710)
chr3 (589-685)||(51976775-51976871)
[»] chr2 (5 HSPs)
chr2 (589-685)||(29894321-29894417)
chr2 (589-685)||(24543228-24543324)
chr2 (591-685)||(36365057-36365151)
chr2 (213-253)||(19639132-19639172)
chr2 (213-253)||(19837725-19837765)
[»] chr5 (1 HSPs)
chr5 (592-685)||(41197356-41197449)
[»] chr8 (1 HSPs)
chr8 (589-685)||(18481248-18481344)
[»] chr6 (1 HSPs)
chr6 (589-667)||(4513087-4513165)
[»] chr7 (1 HSPs)
chr7 (589-685)||(23820538-23820634)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 158 - 685
Target Start/End: Complemental strand, 43813698 - 43813171
Alignment:
Q  158 tgatgcccatttattaataattggagtgataattatcaccatattttcaacagagattcacttttttattagatgaattcaatgtatgtttcatcatttt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43813698 tgatgcccatttattaataattggagtgataattatcaccatattttcgatggagattcacctttttattagatgaattcaatgtatgtttcatcatttt 43813599  T
Q  258 aatttttatatgagactcgattttaaattgtgagattcgtcttaatctctaaagtgtttaaaagagattgtttctcacactattctattaataagtatta 357  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43813598 aatttttatataagactcgattttaaattgtgagattcgtcttaatctctaaagtgtttaaaagagattgtttctcacactattctattaataagtatta 43813499  T
Q  358 ctttatttgtttcttnnnnnnnnntattacttcatttgtctcnnnnnnnttgacattgtctgacgatatgtactatttacataatatattttaattatan 457  Q
    ||| |||||||||||         ||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  43813498 cttcatttgtttcttaaaaaaaagtattacttcatttgtctcaaaaaaattgacattgtctgacaatatgtactatttacataatatattttaactatat 43813399  T
Q  458 nnnnnnactaatatataatggcaaatggtagcgtatggtaaaaaatttcataattaattgaataaatgaagagagaaaatggataggatcataactcaca 557  Q
          | ||||||||||||||||||||||| ||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  43813398 ttttttattaatatataatggcaaatggtagagtatgttaaaaaaattaataatgaattgaataaatgaagagagaaaatggataggatcctaactcaca 43813299  T
Q  558 ccattagtcttgccaacaattgattgtataactcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttc 657  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||| ||    
T  43813298 ctattagtcttgccaacaattgattgtataactcatgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctc 43813199  T
Q  658 atagtagctctctcgtttttgatgatgt 685  Q
    ||| ||||||||||||||||||||||||    
T  43813198 atactagctctctcgtttttgatgatgt 43813171  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 43813876 - 43813731
Alignment:
Q  19 aaagcagtagactaattttgaaatacgtatttataactttaaatgttattact----ctatcgtcaannnnnnnnnnnnnnnnnnnnaactcctccatta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||                    |||||||||||||    
T  43813876 aaagcagtagactaattttgaaatacgtatttataactttaaatgttattactttttctatcgtcaatttttgttattttttattttaactcctccatta 43813777  T
Q  115 gattcgtttgtgcatcgtaagcttataaccttaacgatcaacttga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43813776 gattcgtttgtgcatcgtaagcttataaccttaacgatcaacttga 43813731  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 685
Target Start/End: Complemental strand, 43989354 - 43989258
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || |||| ||||| ||||| |||| ||||||||||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  43989354 ctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgtttatgatgatgt 43989258  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 587 - 685
Target Start/End: Original strand, 21515216 - 21515314
Alignment:
Q  587 aactcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||||  || |||| ||||||||||| |||| |||||| |||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  21515216 aactcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 21515314  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 659
Target Start/End: Complemental strand, 2536578 - 2536508
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcat 659  Q
    ||||||||||||||||||  || |||| ||||||||||| |||| ||||||||||||||| ||||| ||||    
T  2536578 ctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcat 2536508  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 685
Target Start/End: Complemental strand, 11351693 - 11351597
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || |||| ||||||||||| |||| |||||| |||||||| ||||| ||||  |||||  | ||||| |||||||||    
T  11351693 ctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagcttccacgtttatgatgatgt 11351597  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 654
Target Start/End: Complemental strand, 44839953 - 44839888
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccat 654  Q
    ||||||||||||||||||  || ||||| |||||||||| |||| | |||| |||||||| |||||    
T  44839953 ctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccat 44839888  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 36684920 - 36685016
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || ||||  |||||||||| |||| |||||| |||||||| ||||| ||||  |||||||| ||||| |||||||||    
T  36684920 ctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatctcatgctagctctcacgtttatgatgatgt 36685016  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 8705727 - 8705823
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || ||||  |||| ||||| | || ||||||||||||||| ||||| ||||| |||||| | ||||| |||||||||    
T  8705727 ctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtttatgatgatgt 8705823  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 9057614 - 9057710
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || ||||  |||| ||||| | || ||||||||||||||| ||||| ||||| |||||| | ||||| |||||||||    
T  9057614 ctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtttatgatgatgt 9057710  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 51976775 - 51976871
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    |||||| |||||||||||  || |||| ||||||||||| |||| |||||| ||||||||  |||| ||||  |||||| | ||||| |||||||||    
T  51976775 ctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctccatctcatgctagctcccacgtttatgatgatgt 51976871  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 589 - 685
Target Start/End: Complemental strand, 29894417 - 29894321
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  || |||| ||||||||||| |||| |||||| |||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  29894417 ctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 29894321  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 24543228 - 24543324
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  |  |||| ||||||||||| |||| |||||| |||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  24543228 ctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 24543324  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 685
Target Start/End: Original strand, 36365057 - 36365151
Alignment:
Q  591 catgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||  || |||| ||||| ||||| |||| |||||| |||||||| ||||| ||||  |||||| | ||||| || ||||||    
T  36365057 catgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatggtgatgt 36365151  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 19639132 - 19639172
Alignment:
Q  213 attcacttttttattagatgaattcaatgtatgtttcatca 253  Q
    ||||||| |||||||||||||| ||||||||||| ||||||    
T  19639132 attcactattttattagatgaaatcaatgtatgtctcatca 19639172  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 19837725 - 19837765
Alignment:
Q  213 attcacttttttattagatgaattcaatgtatgtttcatca 253  Q
    ||||||| |||||||||||||| ||||||||||| ||||||    
T  19837725 attcactattttattagatgaaatcaatgtatgtctcatca 19837765  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 592 - 685
Target Start/End: Complemental strand, 41197449 - 41197356
Alignment:
Q  592 atgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    |||||||||||||||  || |||| ||||||||||| |||| |||||| |||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  41197449 atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 41197356  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 18481248 - 18481344
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||||||||||||||||  ||  ||||||||||||||  |||| |||||| |||||||| ||||| ||||  |||||| | ||||| |||||||||    
T  18481248 ctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 18481344  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 4513087 - 4513165
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctc 667  Q
    ||||||||||||||||||  || |||| ||||||||||| | || |||||| |||||||| ||||| ||||| ||||||    
T  4513087 ctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctc 4513165  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 685
Target Start/End: Original strand, 23820538 - 23820634
Alignment:
Q  589 ctcatgtcgagttcaataatagacaagtcaatggggtcgttcattaattagttagggtagtcccatttcatagtagctctctcgtttttgatgatgt 685  Q
    ||||| ||||||||||||  || |||| ||||||||||| |||| |||||| ||||||||  |||| ||||  |||||| | | ||| |||||||||    
T  23820538 ctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatccatctcatgctagctcccacatttatgatgatgt 23820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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