View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_high_10 (Length: 348)
Name: NF4126_high_10
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 30707711 - 30708026
Alignment:
| Q |
1 |
acattttccaattgggaaactcttgtcacatttgaagccagcacctttcttatttccataacctgggtaaaaatgttgataaaaagtcacctcttcaata |
100 |
Q |
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| T |
30707711 |
acattttccaattgggaaactcttgtcacatttgaagccagcacctttcttatttccataacctgggtaaaaatgttgataaaaagtcacctcttcaata |
30707810 |
T |
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| Q |
101 |
aatagtaatttctcattttctgccagattcttgatattccagttactaaaaggatgggctgttttgtgagtaatatgaatttcacctccaacattaagca |
200 |
Q |
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| T |
30707811 |
aatagtaatttctcattttctgccagattcttgatattccagttactaaaaggatgggctgttttgtgagtaatatgaatttcacctccaacattaagca |
30707910 |
T |
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| Q |
201 |
tgtactttgcactacctagaaatccactcactaattttttgtgttccctgtattaaatgaaaggataaaatttaattaattatgataaggaccttttgat |
300 |
Q |
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| T |
30707911 |
tatactttgcactacctagaaatccactcactaattttttgtgttccctgtattaaatgaaaggataaaatttaattaattatgataaggaccttttgat |
30708010 |
T |
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| Q |
301 |
taagtaaatacaaaaa |
316 |
Q |
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| T |
30708011 |
taagtaaatacaaaaa |
30708026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 30726836 - 30727029
Alignment:
| Q |
59 |
taacctgggtaaaaatgttgataaaaagtcacctcttcaataaatagtaatttctcattttctgccagattcttgatattccagttactaaaaggatggg |
158 |
Q |
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| T |
30726836 |
taacctggatacaaaacttgatgaaaatccacttcttcaataaatgataaatcctcattttctgcaagattcttgatattccagttactataaggatatg |
30726935 |
T |
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| Q |
159 |
ctgttttgtgagtaatatgaatttcacctccaacattaagcatgtactttgcactacctagaaatccactcactaattttttgtgttccctgta |
252 |
Q |
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| T |
30726936 |
atgttttgtgggtaatatgaatttcaccaaaaaaacgaagcatagacttagcacttcttagaaacccactcactaatttcttgtgttgcctgta |
30727029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 30737968 - 30738009
Alignment:
| Q |
164 |
ttgtgagtaatatgaatttcacctccaacattaagcatgtac |
205 |
Q |
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| T |
30737968 |
ttgtgagaaatatgaatttcaccaccaacactaagcatgtac |
30738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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