View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4126_high_4 (Length: 520)

Name: NF4126_high_4
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4126_high_4
NF4126_high_4
[»] chr1 (32 HSPs)
chr1 (11-504)||(9385660-9386160)
chr1 (272-472)||(9232505-9232705)
chr1 (93-218)||(28455875-28456002)
chr1 (93-218)||(32007075-32007202)
chr1 (93-218)||(45813011-45813138)
chr1 (95-218)||(778578-778702)
chr1 (93-218)||(5055788-5055915)
chr1 (93-218)||(29994383-29994510)
chr1 (93-218)||(41808203-41808330)
chr1 (93-218)||(20749-20876)
chr1 (93-218)||(48660023-48660150)
chr1 (125-218)||(7059501-7059595)
chr1 (93-218)||(5943682-5943809)
chr1 (93-218)||(41761411-41761538)
chr1 (93-217)||(35945798-35945924)
chr1 (148-218)||(41039303-41039373)
chr1 (99-218)||(39276357-39276478)
chr1 (93-215)||(2088908-2089032)
chr1 (93-218)||(49783708-49783835)
chr1 (93-214)||(50106200-50106323)
chr1 (148-218)||(4066019-4066089)
chr1 (165-215)||(13183179-13183229)
chr1 (95-183)||(29587255-29587345)
chr1 (165-218)||(13109845-13109898)
chr1 (138-218)||(26032848-26032929)
chr1 (93-218)||(192416-192543)
chr1 (148-218)||(35110099-35110169)
chr1 (165-218)||(13097379-13097432)
chr1 (93-218)||(46447373-46447504)
chr1 (150-214)||(39228492-39228554)
chr1 (93-215)||(7275682-7275806)
chr1 (165-217)||(26264537-26264589)
[»] chr7 (34 HSPs)
chr7 (93-218)||(47557782-47557909)
chr7 (93-218)||(25112247-25112374)
chr7 (93-218)||(25546275-25546402)
chr7 (93-218)||(2146637-2146764)
chr7 (93-218)||(4106739-4106866)
chr7 (93-218)||(23358186-23358313)
chr7 (93-218)||(31770532-31770659)
chr7 (93-218)||(40058239-40058366)
chr7 (96-217)||(43753754-43753878)
chr7 (93-215)||(44083941-44084065)
chr7 (93-218)||(27915580-27915708)
chr7 (105-218)||(4107322-4107437)
chr7 (125-218)||(48146787-48146881)
chr7 (98-208)||(27229487-27229600)
chr7 (91-218)||(47250251-47250380)
chr7 (93-218)||(32606330-32606457)
chr7 (93-194)||(47960979-47961082)
chr7 (148-218)||(38781208-38781278)
chr7 (148-218)||(47570718-47570788)
chr7 (95-218)||(8439081-8439206)
chr7 (153-218)||(11355886-11355951)
chr7 (99-218)||(29484755-29484876)
chr7 (93-218)||(7162790-7162915)
chr7 (93-218)||(25872764-25872891)
chr7 (93-214)||(38033730-38033853)
chr7 (148-218)||(42081619-42081686)
chr7 (93-205)||(25049971-25050085)
chr7 (138-218)||(48444152-48444233)
chr7 (161-209)||(34763513-34763561)
chr7 (93-218)||(5772819-5772946)
chr7 (95-203)||(13887174-13887282)
chr7 (108-218)||(41183831-41183943)
chr7 (148-218)||(5587338-5587408)
chr7 (148-218)||(5592299-5592369)
[»] scaffold0032 (1 HSPs)
scaffold0032 (93-218)||(56482-56609)
[»] chr2 (28 HSPs)
chr2 (96-218)||(11816550-11816675)
chr2 (93-218)||(10639606-10639733)
chr2 (93-218)||(11459716-11459843)
chr2 (93-218)||(33083554-33083681)
chr2 (93-218)||(23839860-23839987)
chr2 (93-218)||(26605625-26605752)
chr2 (93-218)||(39535534-39535661)
chr2 (93-215)||(11708679-11708803)
chr2 (93-218)||(19537308-19537435)
chr2 (110-218)||(37197610-37197720)
chr2 (93-218)||(19048755-19048882)
chr2 (139-218)||(33001751-33001830)
chr2 (93-218)||(34460370-34460497)
chr2 (93-218)||(45125165-45125292)
chr2 (93-218)||(27137918-27138044)
chr2 (93-218)||(39831444-39831570)
chr2 (95-215)||(16654366-16654488)
chr2 (138-218)||(4851367-4851448)
chr2 (93-218)||(7275886-7276014)
chr2 (92-218)||(34239820-34239948)
chr2 (148-218)||(29659218-29659288)
chr2 (165-218)||(42578243-42578296)
chr2 (93-218)||(19816221-19816348)
chr2 (95-216)||(20497592-20497715)
chr2 (138-215)||(4800923-4801001)
chr2 (161-218)||(44181887-44181944)
chr2 (93-218)||(34234531-34234656)
chr2 (93-187)||(45201903-45201999)
[»] scaffold1348 (1 HSPs)
scaffold1348 (93-218)||(862-989)
[»] chr8 (33 HSPs)
chr8 (93-218)||(70523-70650)
chr8 (93-218)||(6602518-6602645)
chr8 (93-218)||(6677971-6678098)
chr8 (93-218)||(32333115-32333242)
chr8 (93-218)||(45264640-45264766)
chr8 (93-218)||(1078648-1078775)
chr8 (93-218)||(28817257-28817384)
chr8 (93-218)||(31969720-31969847)
chr8 (93-218)||(35779497-35779624)
chr8 (93-218)||(42192639-42192766)
chr8 (93-218)||(10963242-10963367)
chr8 (93-218)||(1340-1467)
chr8 (93-218)||(4530982-4531109)
chr8 (93-218)||(7792662-7792789)
chr8 (93-217)||(40911222-40911347)
chr8 (110-218)||(42885192-42885302)
chr8 (93-215)||(7813323-7813447)
chr8 (93-218)||(3822397-3822524)
chr8 (138-208)||(5385385-5385456)
chr8 (96-218)||(39303313-39303438)
chr8 (93-218)||(12534720-12534845)
chr8 (97-217)||(41849233-41849354)
chr8 (162-215)||(31532128-31532181)
chr8 (131-217)||(18752381-18752468)
chr8 (93-218)||(39435283-39435410)
chr8 (149-218)||(13891149-13891218)
chr8 (130-218)||(2907054-2907142)
chr8 (131-217)||(7403696-7403782)
chr8 (168-218)||(42364702-42364752)
chr8 (93-188)||(18386709-18386806)
chr8 (161-218)||(29425422-29425479)
chr8 (153-218)||(31695269-31695334)
chr8 (150-218)||(9775042-9775110)
[»] chr6 (17 HSPs)
chr6 (93-218)||(33621495-33621622)
chr6 (93-218)||(33704217-33704344)
chr6 (93-218)||(21000693-21000820)
chr6 (93-218)||(28322933-28323060)
chr6 (117-218)||(4464152-4464255)
chr6 (93-218)||(21037292-21037418)
chr6 (149-218)||(361070-361139)
chr6 (125-218)||(19145505-19145598)
chr6 (153-218)||(29009650-29009715)
chr6 (161-218)||(35218640-35218697)
chr6 (93-218)||(2959150-2959277)
chr6 (131-188)||(11572048-11572106)
chr6 (167-208)||(10999418-10999459)
chr6 (125-218)||(16518457-16518549)
chr6 (164-218)||(28592128-28592182)
chr6 (153-218)||(32289408-32289473)
chr6 (139-218)||(24619079-24619159)
[»] chr5 (19 HSPs)
chr5 (93-218)||(13203958-13204085)
chr5 (93-208)||(27721432-27721549)
chr5 (93-218)||(35317697-35317824)
chr5 (93-218)||(21018224-21018351)
chr5 (93-218)||(29265876-29266003)
chr5 (125-218)||(31909385-31909479)
chr5 (91-218)||(4824939-4825068)
chr5 (93-215)||(1191543-1191667)
chr5 (93-218)||(2970985-2971112)
chr5 (93-218)||(12257357-12257484)
chr5 (93-194)||(9576985-9577088)
chr5 (95-215)||(6020995-6021117)
chr5 (96-218)||(8734000-8734125)
chr5 (153-218)||(35545996-35546061)
chr5 (161-218)||(32143414-32143471)
chr5 (93-218)||(11124653-11124780)
chr5 (93-215)||(40177625-40177749)
chr5 (93-218)||(2786272-2786398)
chr5 (149-215)||(17984745-17984811)
[»] chr4 (39 HSPs)
chr4 (93-218)||(1173952-1174079)
chr4 (93-218)||(34739281-34739408)
chr4 (93-218)||(53457825-53457952)
chr4 (87-218)||(55400223-55400356)
chr4 (93-218)||(19849503-19849630)
chr4 (93-218)||(26424858-26424984)
chr4 (93-218)||(28798388-28798515)
chr4 (93-218)||(43139906-43140033)
chr4 (88-217)||(55214648-55214779)
chr4 (93-218)||(18257330-18257457)
chr4 (93-218)||(45874056-45874183)
chr4 (113-208)||(39807865-39807962)
chr4 (93-218)||(54768432-54768559)
chr4 (131-218)||(12735471-12735559)
chr4 (93-218)||(238458-238585)
chr4 (93-218)||(12867842-12867969)
chr4 (150-218)||(2075565-2075633)
chr4 (100-218)||(23417483-23417603)
chr4 (151-218)||(1966611-1966678)
chr4 (93-214)||(23710337-23710460)
chr4 (93-218)||(11277983-11278106)
chr4 (94-218)||(19225261-19225387)
chr4 (125-218)||(22608019-22608113)
chr4 (125-218)||(29581044-29581137)
chr4 (93-208)||(37134049-37134166)
chr4 (93-218)||(19673929-19674056)
chr4 (161-208)||(23532118-23532165)
chr4 (93-177)||(32441125-32441211)
chr4 (148-218)||(50033440-50033510)
chr4 (165-218)||(31015057-31015110)
chr4 (131-218)||(51287641-51287730)
chr4 (165-218)||(52171990-52172043)
chr4 (150-218)||(33770628-33770696)
chr4 (93-194)||(12767088-12767191)
chr4 (125-205)||(32778159-32778238)
chr4 (165-218)||(16555382-16555435)
chr4 (138-214)||(19814152-19814229)
chr4 (93-215)||(2864751-2864875)
chr4 (150-218)||(37620677-37620745)
[»] chr3 (29 HSPs)
chr3 (93-218)||(7824454-7824581)
chr3 (93-218)||(29689482-29689609)
chr3 (93-218)||(54158267-54158394)
chr3 (110-215)||(9349679-9349786)
chr3 (93-218)||(42392805-42392932)
chr3 (93-218)||(43247650-43247777)
chr3 (93-218)||(51665925-51666052)
chr3 (93-218)||(54151681-54151808)
chr3 (93-208)||(55018044-55018161)
chr3 (93-218)||(4601426-4601553)
chr3 (125-218)||(475281-475374)
chr3 (110-218)||(36228994-36229104)
chr3 (110-218)||(3112995-3113105)
chr3 (125-217)||(38257304-38257397)
chr3 (93-217)||(40756728-40756855)
chr3 (93-218)||(43775224-43775351)
chr3 (93-218)||(50729525-50729652)
chr3 (93-218)||(50783197-50783324)
chr3 (93-193)||(35461504-35461606)
chr3 (93-218)||(28844505-28844633)
chr3 (93-218)||(32001424-32001551)
chr3 (93-218)||(33334609-33334736)
chr3 (93-218)||(52500839-52500966)
chr3 (93-218)||(28458664-28458790)
chr3 (148-215)||(7958627-7958694)
chr3 (93-218)||(47635005-47635132)
chr3 (168-218)||(27230744-27230794)
chr3 (163-208)||(448885-448930)
chr3 (93-216)||(1778852-1778977)
[»] scaffold0119 (2 HSPs)
scaffold0119 (93-218)||(13951-14078)
scaffold0119 (93-218)||(19631-19758)
[»] scaffold0044 (1 HSPs)
scaffold0044 (93-218)||(9973-10100)
[»] scaffold0038 (1 HSPs)
scaffold0038 (93-218)||(114253-114380)
[»] scaffold0067 (1 HSPs)
scaffold0067 (96-218)||(34822-34947)
[»] scaffold0053 (1 HSPs)
scaffold0053 (138-218)||(22210-22291)
[»] scaffold0352 (1 HSPs)
scaffold0352 (149-218)||(8943-9012)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 9385660 - 9386160
Alignment:
Q  11 cataggtacagaggatcatcccggagggtcatccgagaggatgcgccgcnnnnnnnnnnngtatatatcaacaaaatattaatctagaagtcctaactta 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||||||||||||||||| |||||||||||||    
T  9385660 cataggtacagaggatcatcccggagggtcatccgaaaggatgcgccgcaaaaaaaaaaagtatatatcaacaaaatattaatctaaaagtcctaactta 9385759  T
Q  111 actggtaaatgccgaattacaaggtcagacgtcgtgaccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaa-------ttac 203  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||       ||||    
T  9385760 actggcaaatgccgaattacaaggtcggacgtcgtgaccgggttcaaacgcgggacctcacagttgtatgtcggtttaattttagtgaattaccaattac 9385859  T
Q  204 cactttatctaagacnnnnnnnnnnnnnnnnnnnnnnntactcatcacatctgtaaactgaggcaattatacgtaccacacttttcggttgtttggtata 303  Q
    |||||||| ||||||                       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9385860 cactttatataagacaaaaaaaataaaaaataaacaaatactcatcacatctgtaaactgaggcaattatacgtaccacatttttcggttgtttggtata 9385959  T
Q  304 cataatgacagaatcgcttatcacattgaacttctccactatcttcatcaacaacctcacaacttgtctcctttccacatctatcttcacaaatcacagg 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9385960 cataatgacagaatcgcttatcacattgaacttctccactatcttcatcaacaacctcacaacttgtctcctttccacatctatcttcacaaatcacagg 9386059  T
Q  404 caaccatgaaagctcaaatccatcaattatgatcccatgaatcacatcataagaaatcttctctttcacttcaatattcaacaatggcctacccaacgta 503  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9386060 caaccatgaaagctcaaatccatcaattatcatcccatgaatcacatcataagaaatcttctctttcacttcaatcttcaacaatggcctacccaacgta 9386159  T
Q  504 g 504  Q
    |    
T  9386160 g 9386160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 272 - 472
Target Start/End: Complemental strand, 9232705 - 9232505
Alignment:
Q  272 atacgtaccacacttttcggttgtttggtatacataatgacagaatcgcttatcacattgaacttctccactatcttcatcaacaacctcacaacttgtc 371  Q
    |||| |||| ||||| || |||||||||||  |||||||||| ||  |||||| |||||||||||||||  | |||||||||||||||| |||||||||     
T  9232705 atacataccgcacttatcagttgtttggtaagcataatgacataactgcttattacattgaacttctcctttttcttcatcaacaaccttacaacttgtt 9232606  T
Q  372 tcctttccacatctatcttcacaaatcacaggcaaccatgaaagctcaaatccatcaattatgatcccatgaatcacatcataagaaatcttctctttca 471  Q
     |||||||||||||||||||||| || |||||||||||||||| ||||| |||||||| ||| |||||||||||| ||||||||| ||  ||||||||||    
T  9232605 ccctttccacatctatcttcacagattacaggcaaccatgaaacctcaactccatcaactatcatcccatgaatctcatcataagtaacattctctttca 9232506  T
Q  472 c 472  Q
    |    
T  9232505 c 9232505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28455875 - 28456002
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  28455875 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 28455974  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  28455975 ttcagtggattaccacttcatctaagac 28456002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 32007075 - 32007202
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  32007075 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 32007174  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  32007175 ttcagtggattaccacttcatctaagac 32007202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 45813138 - 45813011
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  |||||||||| || ||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  45813138 tctagaagtcctagctcaactgacaaatgccgaaattgcaaggtcggacatcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 45813039  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  45813038 ttcagtggattaccacttcatctaagac 45813011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 778578 - 778702
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaattacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaatttc 193  Q
    ||||||| ||| || |||||| ||||||||||||||||||||  |||||||||| | |||||||||   |||||| |||||||| |||| ||||||||||    
T  778578 tagaagttctagctcaactggaaaatgccgaattacaaggtcgaacgtcgtgactcaggttcgaacctaggacctgacagttgtgtgtgagtttaatttc 778677  T
Q  194 agtgaattaccactttatctaagac 218  Q
    |||||||||||| || |||||||||    
T  778678 agtgaattaccaattcatctaagac 778702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 5055915 - 5055788
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || | |||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  5055915 tctagaagtcctagctcagctggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 5055816  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  5055815 ttcagtggattaccacttcatctaagac 5055788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 29994510 - 29994383
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| |||||||| ||| |||||||||||| || ||||||||| |||| |||| |||||||    
T  29994510 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccagacgtcatgatccgggttcgaacccgagacctcacaattgtgtgtgagtttaat 29994411  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  29994410 ttcagtggtttaccacttcatctaagac 29994383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 41808203 - 41808330
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||| ||||||||||||| |||| ||||| |    
T  41808203 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccggaacctcacagttgtgtgtgagtttatt 41808302  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  41808303 ttcagtggattaccacttcatctaagac 41808330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 20749 - 20876
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||||| |||||||||| || |||||   |||| ||||||| || ||||||| ||||||||||||||||| |||| ||||| |    
T  20749 tctagaagtcctaactcaactggcaaatgccgaaattgcaaggcaggacgccgtgacccggattcgaacccgggacctcacagttgtgtgtgagtttatt 20848  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    || |||| |||||||||| |||||||||    
T  20849 tttagtggattaccacttcatctaagac 20876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 48660023 - 48660150
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||  ||||| |||||||||| ||||| ||||||||||| |||| ||||| |    
T  48660023 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttatgacccgggttcgaacccgggatctcacagttgtgtgtgagtttatt 48660122  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  48660123 ttcagtggattaccacttcatctaagac 48660150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 7059501 - 7059595
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| |||||||||||||||||||| |||||||||   | |||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||    
T  7059501 aattgcaaggtcagacgtcgtgacccgggttcgaatctgagacctcacagttgtgtgtgagtttaatttaagtggattaccactttatctaagac 7059595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 5943682 - 5943809
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||| ||||| || |||||  |||||||||| || ||||| | |||||||||||| |||||||||| | ||||||||||||||| |||| |||||||    
T  5943682 tctagaattcctagctcaactgacaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaactcaggacctcacagttgtttgtgagtttaat 5943781  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||| || |||| ||||| |||||||||    
T  5943782 ttcaatggattatcacttcatctaagac 5943809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 41761538 - 41761411
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||  | |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| | ||||||||||||||| |||| ||||| |    
T  41761538 tctagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagtttatt 41761439  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| ||| |||||    
T  41761438 ttcagtggattaccacttcatccaagac 41761411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 35945798 - 35945924
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||||||||||||||||| ||  ||||   ||||| |||||| |||||||||| ||| ||||||||||||| ||||  |||| |    
T  35945798 tctagaagtcctagctcaactggtaaatgccgaaattgtaaggctggacgttgtgacctgggttcgaacccggaacctcacagttgtgtgtgaatttatt 35945897  T
Q  191 ttcagtgaattaccactttatctaaga 217  Q
    ||||||| |||||||||| ||||||||    
T  35945898 ttcagtggattaccacttcatctaaga 35945924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 41039373 - 41039303
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| ||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  41039373 ccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 41039303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 39276357 - 39276478
Alignment:
Q  99 agtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagt 196  Q
    ||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| ||||||||||||||| | |||| ||||| |||||||    
T  39276357 agtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttattttcagt 39276456  T
Q  197 gaattaccactttatctaagac 218  Q
    | |||||||||| || ||||||    
T  39276457 ggattaccacttcatttaagac 39276478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 2089032 - 2088908
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||  |||| ||  |||||||||| ||||||| ||||||||||| | | |||||||| ||||||||| ||| |||    
T  2089032 tctagaagtcctagctcaactggcaaatatcgaaattgtaaggtcagacatcgtgactcgggttcgaactcagaacctcacaattgtatgtgagttcaat 2088933  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||||| |||||||||| ||||||    
T  2088932 ttcagtggattaccacttcatctaa 2088908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 49783708 - 49783835
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||| ||||||||||| || ||| ||||| |||| || |||||||  ||||| |||  ||||||||||| ||| ||||||||||||||||||  ||||||    
T  49783708 tctataagtcctaactcaattggcaaatgtcgaaattgcaaggtcgaacgtcatgattcgggttcgaacccggaacctcacagttgtatgtgaatttaat 49783807  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  49783808 ttcagtggtttaccacttcatctaagac 49783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 50106323 - 50106200
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccga-attacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||| ||||||||||||||  || ||| ||||| |  |||| |||| |||||||||||| ||||||||||||||| | |||| ||||| |    
T  50106323 tctagaagtcctaatttaactggtaaatgttgagattgcaaggccgaacgttgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttatt 50106224  T
Q  191 ttcagtgaattaccactttatcta 214  Q
    ||||||| ||| ||| || |||||    
T  50106223 ttcagtggattgccatttcatcta 50106200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 4066019 - 4066089
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||   | ||||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||    
T  4066019 ccgggttcgaatctgagaccttacaattgtatgtgagtttaatttcagtgaattaccacttcatctaagac 4066089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 13183229 - 13183179
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaa 215  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13183229 accttacagttgtatgtgagtttaatttcagtgaattaccacttcatctaa 13183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 29587255 - 29587345
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgg 183  Q
    ||||||||||| || |||||| |||||||||| || ||||| | |||||||||||| |||||||||| |||||||||||| |||| |||||    
T  29587255 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgacctgggttcgaacccgggacctcacaattgtgtgtgg 29587345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 13109845 - 13109898
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||| |||| |||||||||||||| |||||||||| |||||||||    
T  13109845 acctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaagac 13109898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 26032848 - 26032929
Alignment:
Q  138 gacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| ||||||||||  || ||||||||||| | |||| |||||||||||||| |||||| ||| |||||||||    
T  26032848 gacgtcgtgacccgggttcgaacctggaacctcacagttttgtgtgagtttaatttcagtggattaccgcttcatctaagac 26032929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 192416 - 192543
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  ||||||  || || ||||| | ||||| |||| ||| |||||||| | ||||||||||||||| |||| ||||| |    
T  192416 tctagaagtcctagctcaactgacaaatgctaaaattgcaaggccggacgttgtgatccgtgttcgaacccaggacctcacagttgtgtgtgagtttatt 192515  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||| | |||||||||| |||||||||    
T  192516 ttcagcggattaccacttcatctaagac 192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 35110169 - 35110099
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| | |||||| |||||||| |||| ||||||||| || | |||||||||| |||||||||    
T  35110169 ccgggttcgaacccaggaccttacagttgtgtgtgagtttaatttgagaggattaccacttcatctaagac 35110099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 13097379 - 13097432
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||||||||| ||||||||| | || |||||||||| |||||||||    
T  13097379 acctcacagttgtatgtgagtttaattttattggattaccacttcatctaagac 13097432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 46447504 - 46447373
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaa- 189  Q
    ||||||||| |||  | |||||| |||||||||| || |||||   |||||||| ||| |||||||||| ||||||||||||||| | |||| ||||||     
T  46447504 tctagaagttctagttcaactggcaaatgccgaaattgcaaggctcgacgtcgtaacccgggttcgaacccgggacctcacagttatgtgtgagtttaat 46447405  T
Q  190 ---tttcagtgaattaccactttatctaagac 218  Q
       |||||||| |||||||| | |||||||||    
T  46447404 tattttcagtggattaccacatcatctaagac 46447373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 39228492 - 39228554
Alignment:
Q  150 gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatcta 214  Q
    |||||||||||||| || |||||||||  |||| ||||||||| | | |||||||||||||||||    
T  39228492 gggttcgaacacggaacatcacagttg--tgtgagtttaattttaataaattaccactttatcta 39228554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 7275682 - 7275806
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||| || ||||| |||||| ||||| |||| ||  |||||| |||||  |||| ||| ||||||| ||| || |||||||||| | || |||||||    
T  7275682 tctagaaatcttaactcaactggcaaatgtcgaaattgtaaggtcggacgttatgactcggattcgaacccggaacttcacagttgtgtatgagtttaat 7275781  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    |||||||  ||||||||| ||||||    
T  7275782 ttcagtggtttaccacttcatctaa 7275806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 26264589 - 26264537
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaaga 217  Q
    ||||||||||||| |||| ||||||||||| || |||| ||||| ||||||||    
T  26264589 acctcacagttgtgtgtgagtttaatttcaatgtattatcacttcatctaaga 26264537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 47557782 - 47557909
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||  ||||| ||||| |||||||||| ||| |||||||||||||||||| |||||||    
T  47557782 tctagaagtcctaactcaactggtaaatgccgaaattacaaggtcgcacgtcatgacccgggttcgaacccggaacctcacagttgtatgtgagtttaat 47557881  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  47557882 ttcagtggtttaccacttcatctaagac 47557909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 25112374 - 25112247
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||| ||||| || ||||||| |||||| ||||| |||||||||| ||||||||||||||||| |||||||||| |    
T  25112374 tctagaagtcctagctcaactggcaaataccgaaattgcaaggtcggacgtcatgacctgggttcgaacccgggacctcacagttgtgtgtgggtttatt 25112275  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  25112274 ttcagtggattaccacttcatctaagac 25112247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 25546402 - 25546275
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||||||||||||||||| || ||||| | |||||| ||||| |||||||||  ||||||||||||||||| |||| |||||||    
T  25546402 tctagaagtcctagctcaactggtaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaatccgggacctcacagttgtgtgtgagtttaat 25546303  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  25546302 ttcagtggtttaccacttcatctaagac 25546275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 2146637 - 2146764
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| |  |||||||||||||| |||||||||| |    
T  2146637 tctagaagtcctagctcaactggaaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccaagacctcacagttgtgtgtgggtttatt 2146736  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  2146737 ttcagtggattaccacttcatctaagac 2146764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 4106739 - 4106866
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| |  |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  4106739 tctagaagtcctagcccaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 4106838  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  4106839 ttcagtggattaccacttcatctaagac 4106866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 23358186 - 23358313
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||| ||||| || ||||| | |||||||| ||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  23358186 tctagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgtcgtaacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 23358285  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  23358286 ttcagtggattaccacttcatctaagac 23358313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 31770659 - 31770532
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | || ||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  31770659 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggatgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 31770560  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  31770559 ttcagtggattaccacttcatctaagac 31770532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 40058239 - 40058366
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||||| ||||||| || || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| | || ||||| |    
T  40058239 tctagaagtcctaactcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtatgagtttatt 40058338  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  40058339 ttcagtggattaccacttcatctaagac 40058366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 43753878 - 43753754
Alignment:
Q  96 agaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtg-ggtttaattt 192  Q
    ||||||||||  | |||||| |||||||||| || ||||| | |||||||||||| |||||||||| ||| |||||||||||||||||| | ||||||||    
T  43753878 agaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaattt 43753779  T
Q  193 cagtgaattaccactttatctaaga 217  Q
    ||||| |||||||||| ||||||||    
T  43753778 cagtggattaccacttcatctaaga 43753754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 44083941 - 44084065
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||||| || || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  44083941 tctagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 44084040  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||||| |||||||||| ||||||    
T  44084041 ttcagtggattaccacttcatctaa 44084065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 27915708 - 27915580
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtgacc--gggttcgaacacgggacctcacagttgtatgtgggtttaa 189  Q
    |||||||||||||||| ||||||||||||| | |||| ||||||| ||||||||||||  | ||||||||    || ||||||||||| | || ||||||    
T  27915708 tctagaagtcctaactcaactggtaaatgctgaaattgcaaggtcggacgtcgtgaccttgagttcgaacctaagatctcacagttgtgtatgagtttaa 27915609  T
Q  190 tttcagtgaattaccactttatctaagac 218  Q
    ||||| ||||||||||||| |||||||||    
T  27915608 tttcaatgaattaccacttcatctaagac 27915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 4107322 - 4107437
Alignment:
Q  105 aacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaatta 202  Q
    |||| |||||| |||||||||| || ||||| | ||||||  |||| |||||||||| ||||||||||||||||| |||| ||||| |||||||| ||||    
T  4107322 aactcaactggcaaatgccgaaattgcaaggccggacgtcacgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggatta 4107421  T
Q  203 ccactttatctaagac 218  Q
    |||||| |||||||||    
T  4107422 ccacttcatctaagac 4107437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 48146787 - 48146881
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| |||||||||| ||||||||| |||||||||| ||||||||||||||||| |||| ||| | ||||| || |||||||||| |||||||||    
T  48146787 aattgcaaggtcagatgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagttaattttcattggattaccacttcatctaagac 48146881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 27229600 - 27229487
Alignment:
Q  98 aagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtg-ggtttaatttca 194  Q
    ||||||||||| |||||  ||||| |||| || ||||| | |||||||||||| |||||||||| ||||||||||||||||| |||| | ||||||||||    
T  27229600 aagtcctaactcaactgacaaatgtcgaaattgcaaggccggacgtcgtgacctgggttcgaacccgggacctcacagttgtgtgtgagttttaatttca 27229501  T
Q  195 gtgaattaccactt 208  Q
    ||| ||||||||||    
T  27229500 gtggattaccactt 27229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 47250380 - 47250251
Alignment:
Q  91 aatctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttta 188  Q
    ||||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| ||||||||||  |||| |||  |||||| |||| |||||    
T  47250380 aatctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacctgggatctcttagttgtgtgtgagttta 47250281  T
Q  189 atttcagtgaattaccactttatctaagac 218  Q
     |||||||| |||||||||| |||||||||    
T  47250280 ttttcagtggattaccacttcatctaagac 47250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32606457 - 32606330
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| |||||| |||||  |||| ||||| || ||||| | ||||||||||||  ||||||||| || ||||| |||||| ||||||  ||||||    
T  32606457 tctagaagttctaactcaactgacaaataccgaaattgcaaggccggacgtcgtgacccaggttcgaacccgagaccttacagttttatgtgaatttaat 32606358  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||||| || |||||||||    
T  32606357 ttcagtgaattaccaattcatctaagac 32606330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 47961082 - 47960979
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| ||||| |||| | ||||||| || ||||||||||||||||| ||| |||||||||||| |||||||||  |||||| |||| |||||||    
T  47961082 tctagaagtcttaactcaacttgcaaatgccaaaattacaaggtcagacgtcatgaaccgggttcgaacccgggacctcgtagttgtgtgtgagtttaat 47960983  T
Q  191 ttca 194  Q
    ||||    
T  47960982 ttca 47960979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 38781278 - 38781208
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||||| ||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  38781278 ccggattcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 38781208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 47570788 - 47570718
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| ||||| ||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  47570788 ccgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 47570718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 8439081 - 8439206
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaattt 192  Q
    |||||||||||  | |||||| ||||||| || || ||||||| ||||| |||||| || ||||||| | ||||||||||||||| ||||  |||| |||    
T  8439081 tagaagtcctagttcaactggcaaatgccaaaattgcaaggtcggacgttgtgacccggattcgaacccaggacctcacagttgtgtgtgaatttatttt 8439180  T
Q  193 cagtgaattaccactttatctaagac 218  Q
    ||||| |||||||||| |||||||||    
T  8439181 cagtggattaccacttcatctaagac 8439206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 11355886 - 11355951
Alignment:
Q  153 ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||| ||||| ||||||||||| |||| |||||||||||||| |||||||||| |||||||||    
T  11355886 ttcgaacccgggatctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaagac 11355951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 29484876 - 29484755
Alignment:
Q  99 agtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagt 196  Q
    ||||||| || |||||| |||||||||| || ||||| | |||||| ||| | ||||| |||| |||||||||||| ||||||||| |||||||||||||    
T  29484876 agtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgatctgggtttgaacccgggacctcacaattgtatgtgagtttaatttcagt 29484777  T
Q  197 gaattaccactttatctaagac 218  Q
    | |||| ||||| || ||||||    
T  29484776 ggattatcacttcatataagac 29484755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 7162915 - 7162790
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||| |||||||| || |||||| |||||||||| ||  |||| | ||||| |||||| |||||||||| |||||||||||| |||  |||| ||||| |    
T  7162915 tctaaaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgacccgggttcgaactcgggacctcacaattg--tgtgagtttatt 7162818  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  7162817 ttcagtggattaccacttcatctaagac 7162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 25872764 - 25872891
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccga-attacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| || ||| ||||||||| ||||||||||| |||||||||| || |||||||||    ||||| ||| |||| | || ||||| |    
T  25872764 tctagaagtcctaactcaattggcaaatgccgatattacaaggtcggacgtcgtgatccaggttcgaacctatgaccttacaattgtgtatgagtttatt 25872863  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||| |||| ||||||||| |||||||||    
T  25872864 ttctgtgatttaccacttcatctaagac 25872891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 38033730 - 38033853
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| |||||| |||||| |||||||||| ||  |||||| ||| | |||| |||||||| ||  ||||||||||||||||| |||| ||||| |    
T  38033730 tctagaagttctaactcaactggcaaatgccgaaattgtaaggtcggacattgtgatccgggttcaaatccgggacctcacagttgtgtgtgagtttatt 38033829  T
Q  191 ttcagtgaattaccactttatcta 214  Q
    ||||||| | |||||||| |||||    
T  38033830 ttcagtggagtaccacttcatcta 38033853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 42081686 - 42081619
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| | |||||||||||||||  ||| ||||| |||||||||||||||||||||||||||||    
T  42081686 ccgggttcgaac-ctggacctcacagttgt--gtgagtttattttcagtgaattaccactttatctaagac 42081619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 25050085 - 25049971
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| |||||| |||| | |||||||||| ||  ||||||||||||||||||| || || |||| |  || |||||||||||||||| |||||||    
T  25050085 tctagaagttctaactcaactagaaaatgccgaaattgaaaggtcagacgtcgtgacctggatttgaactcatgatctcacagttgtatgtgagtttaat 25049986  T
Q  191 ttcagtgaattacca 205  Q
    || |||| |||||||    
T  25049985 ttaagtggattacca 25049971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 48444233 - 48444152
Alignment:
Q  138 gacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| | |||||||||| | | || |||||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  48444233 gacgtcgtgatctgggttcgaaccctgtacttcacagttgtgtgtaagtttaatttcagtgaattaccacttcatctaagac 48444152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 34763513 - 34763561
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccacttt 209  Q
    ||||||||||||||||| |||| |||||||||||||| |||||||||||    
T  34763513 cgggacctcacagttgtgtgtgagtttaatttcagtggattaccacttt 34763561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 5772946 - 5772819
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| || || ||| || |||||||||| || ||||||| |||   |||||| |||||||||| ||  ||||||||||||| |||| |||||||    
T  5772946 tctagaagtcttagctcaacgggcaaatgccgaaattgcaaggtcggacaatgtgacccgggttcgaactcgaaacctcacagttgtgtgtgagtttaat 5772847  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| || ||||||    
T  5772846 ttcagtggtttaccacttcatttaagac 5772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 13887174 - 13887282
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaattt 192  Q
    |||||||| ||||| |||||| |||||||||| || ||||  | ||||||||||||  ||||||||| ||| ||||||||||||||  || |||||||||    
T  13887174 tagaagtcttaactcaactggcaaatgccgaacttgcaagaccggacgtcgtgacccaggttcgaacccggaacctcacagttgta--tgagtttaattt 13887271  T
Q  193 cagtgaattac 203  Q
    ||||| |||||    
T  13887272 cagtggattac 13887282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 41183831 - 41183943
Alignment:
Q  108 ttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattacca 205  Q
    |||||||| |||||||||| || ||||| | |||||| ||||| |||||||||| |   ||||||||||| | |||| ||||| |||||||| |||| ||    
T  41183831 ttaactggcaaatgccgaaattgcaaggccggacgtcttgacctgggttcgaacccaatacctcacagttatgtgtgagtttattttcagtggattatca 41183930  T
Q  206 ctttatctaagac 218  Q
    ||| |||||||||    
T  41183931 cttcatctaagac 41183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 5587338 - 5587408
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| | |||||||||| ||   |||| ||||||||| |||| |||||||||| |||||||||    
T  5587338 ccgggttcgaacccaggacctcacatttacgtgtgagtttaattttagtggattaccacttcatctaagac 5587408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 5592299 - 5592369
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| | |||||||||| ||   |||| ||||||||| |||| |||||||||| |||||||||    
T  5592299 ccgggttcgaacccaggacctcacatttacgtgtgagtttaattttagtggattaccacttcatctaagac 5592369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 56482 - 56609
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  56482 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 56581  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  56582 ttcagtggattaccacttcatctaagac 56609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 11816675 - 11816550
Alignment:
Q  96 agaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttt-aattt 192  Q
    |||||||||| || |||||| |||||||||| || ||||||| |||||||||||| |||||||||| ||| |||||||||||||||||| |||| |||||    
T  11816675 agaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaattt 11816576  T
Q  193 cagtgaattaccactttatctaagac 218  Q
    ||||| |||||||||| |||||||||    
T  11816575 cagtggattaccacttcatctaagac 11816550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 10639733 - 10639606
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  10639733 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 10639634  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  10639633 ttcagtggattaccacttcatctaagac 10639606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 11459716 - 11459843
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  11459716 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgtgtttatt 11459815  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||| || |||||||||| |||||||||    
T  11459816 ttcaatggattaccacttcatctaagac 11459843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 33083681 - 33083554
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  33083681 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 33083582  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  33083581 ttcagtggattaccacttcatctaagac 33083554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 23839860 - 23839987
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||||| ||||||| || || ||||| | ||||| |||||| ||||||||||  |||||||||||||||| |||| ||||| |    
T  23839860 tctagaagtcctaactcaactggcaaatgccaaaattgcaaggccggacgttgtgacctgggttcgaacctgggacctcacagttgtgtgtgagtttatt 23839959  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  23839960 ttcagtggattaccacttcatctaagac 23839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 26605625 - 26605752
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| ||||  |||| |    
T  26605625 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgaatttatt 26605724  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  26605725 ttcagtggattaccacttcatctaagac 26605752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 39535661 - 39535534
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||| | ||||| |||| || ||||| | |||||||||||| |||||||||| ||||||||||||||| |||||| |||||||    
T  39535661 tctagaagtcctaactcaactagcaaatgtcgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttttatgtgagtttaat 39535562  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    || || | |||||||||| |||||||||    
T  39535561 ttgagcggattaccacttcatctaagac 39535534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 11708679 - 11708803
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| ||  |||| | ||||| |||||| |||||||||| | ||||||||||||||| |||||||||| |    
T  11708679 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgggtttatt 11708778  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||||| |||||||||| ||||||    
T  11708779 ttcagtggattaccacttcatctaa 11708803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 19537308 - 19537435
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||  | |||||| |||||||||| || ||||| | ||||| |||| |||||||||||| ||| ||||||||||||| |||| ||||| |    
T  19537308 tctagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgtgtttatt 19537407  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  19537408 ttcagtggattaccacttcatctaagac 19537435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 37197720 - 37197610
Alignment:
Q  110 aactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccact 207  Q
    |||||| |||||||||| || |||||   |||||||||||| |||||||||| ||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  37197720 aactggcaaatgccgaaattgcaaggctggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccact 37197621  T
Q  208 ttatctaagac 218  Q
    | |||||||||    
T  37197620 tcatctaagac 37197610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 19048755 - 19048882
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| ||  |||| | |||||| ||| |||||||||||| |||||||||||| |||| |||| ||||| |    
T  19048755 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagt 19048854  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  19048855 ttcagtggtttaccacttcatctaagac 19048882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 33001751 - 33001830
Alignment:
Q  139 acgtcgtgaccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||| |||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||| || |||||||||    
T  33001751 acgttgtgactgggttcgaacacaggacctcacagttatatgtgagtttaatttcagtggattaccatttcatctaagac 33001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 34460370 - 34460497
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  |||||||||| || ||||| | ||||| |||||| |||||||||| | | ||||||||||||| |||| ||||| |    
T  34460370 tctagaagtcctagctcaactgacaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccagaacctcacagttgtgtgtgagtttatt 34460469  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  34460470 ttcagtggattaccacttcatctaagac 34460497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 45125292 - 45125165
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| ||  |||| | ||||| |||||  |||||||||| ||| ||||||||||||| |||| ||||| |    
T  45125292 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgacttgggttcgaactcggaacctcacagttgtgtgtgagtttatt 45125193  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  45125192 ttcagtggattaccacttcatctaagac 45125165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 27138044 - 27137918
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatt 191  Q
    ||||||||||||| || |||||  |||||| ||| |  |||| |  || |||||||| |||||||||| |||||||| |||||| |||||| ||||||||    
T  27138044 tctagaagtcctagctcaactgacaaatgctgaaattgaaggccgaacatcgtgacctgggttcgaacccgggaccttacagttttatgtgagtttaatt 27137945  T
Q  192 tcagtgaattaccactttatctaagac 218  Q
    |||||| |||||||||| |||||||||    
T  27137944 tcagtggattaccacttcatctaagac 27137918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 39831570 - 39831444
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||| |||||||| || |||||| |||| ||||| || ||||| | |||||| ||| |||||||||||| |||||||||||| |||| |||| |||||||    
T  39831570 tctataagtcctagctcaactggcaaataccgaaattgcaaggccggacgtcatgatccgggttcgaac-cgggacctcacaattgtgtgtgagtttaat 39831472  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  39831471 ttcagtggtttaccacttcatctaagac 39831444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 16654366 - 16654488
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaattt 192  Q
    |||||||||||||| ||||| ||||||||||| || ||||| | |||| ||||| ||| |||||||| ||| ||||||||||||| |||| ||||| |||    
T  16654366 tagaagtcctaactcaactgataaatgccgaaattgcaaggccggacgccgtgatccgagttcgaacccggaacctcacagttgtgtgtgagtttatttt 16654465  T
Q  193 cagtgaattaccactttatctaa 215  Q
     |||||||| || ||| ||||||    
T  16654466 tagtgaattgccccttcatctaa 16654488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 4851367 - 4851448
Alignment:
Q  138 gacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| ||| |||||    
T  4851367 gacgtcgtgatccgggttcaaacccgggacctcacagttgtgtgtgagtttaattttagtggattaccacttcatccaagac 4851448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 7276014 - 7275886
Alignment:
Q  93 tctagaagtcctaacttaactggtaaa-tgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaa 189  Q
    |||||||||||||||| |||||  ||| ||||||| || ||||||| || |||||| || |||||||||| ||||||||||||||||| |||   |||||    
T  7276014 tctagaagtcctaactcaactgacaaaatgccgaaattgcaaggtcggatgtcgtggcccgggttcgaacccgggacctcacagttgtgtgtaaatttaa 7275915  T
Q  190 tttcagtgaattaccactttatctaagac 218  Q
    ||| | || |||||||||| |||||||||    
T  7275914 ttttaatggattaccacttcatctaagac 7275886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 34239948 - 34239820
Alignment:
Q  92 atctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaa 189  Q
    |||||||||||||||||  ||| | |||||||||| ||  |||||||||||||||||| || |||||||| | | |||| |||||||| | || ||||||    
T  34239948 atctagaagtcctaactctactagcaaatgccgaaattgtaaggtcagacgtcgtgactcgagttcgaactcagaaccttacagttgtgtatgagtttaa 34239849  T
Q  190 tttcagtgaattaccactttatctaagac 218  Q
    ||||| | ||||||||||| || ||||||    
T  34239848 tttcaataaattaccacttcatttaagac 34239820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 29659288 - 29659218
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| |  |||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  29659288 ccgggttcgaacccatgacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 29659218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 42578243 - 42578296
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  42578243 acctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 42578296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 19816221 - 19816348
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||| ||| |||| ||||| | ||||| |||| ||||||| |||| ||| ||||| ||||||| | || ||||| |    
T  19816221 tctagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgttgtgacccgggtttgaacccggaacctcgcagttgtgtatgagtttatt 19816320  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  ||||| |||| |||||||||    
T  19816321 ttcagtagattacaacttcatctaagac 19816348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 20497715 - 20497592
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaattt 192  Q
    |||||||||||||| |||| | ||||| || ||||| |||||   |||||||||  | ||||| ||| ||| |||||||| ||||||||| |||| ||||    
T  20497715 tagaagtcctaactcaactagaaaatgtcgaaattataaggttgaacgtcgtgattcaggttcaaacccggaacctcacaattgtatgtgagttttattt 20497616  T
Q  193 cagtgaattaccactttatctaag 216  Q
    |||||  ||||||||| |||||||    
T  20497615 cagtggtttaccacttcatctaag 20497592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 4800923 - 4801001
Alignment:
Q  138 gacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaa 215  Q
    |||||||||||| | |||||||| ||| ||||| | ||| | |||| |||||||| |||||||||||||||| ||||||    
T  4800923 gacgtcgtgacctgagttcgaacccggaacctcgcggttatgtgtgagtttaattccagtgaattaccacttcatctaa 4801001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 44181944 - 44181887
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||| ||||||||||| |||| ||||| |||||||| |||| ||||| |||||||||    
T  44181944 cgggatctcacagttgtgtgtgagtttattttcagtggattatcacttaatctaagac 44181887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 34234531 - 34234656
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||| |||| ||||||| || || |||| | | ||| |||| || ||||||| |||||  |||| |||||||    
T  34234531 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggatgttgtgatctgagtttgaacccgagacctcatagttg--tgtgagtttaat 34234628  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  || ||||||| |||||||||    
T  34234629 ttcagtagatcaccacttcatctaagac 34234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 45201999 - 45201903
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggttt 187  Q
    |||||||||||||||| || ||| ||||| |||| ||  |||||| | |||||||| ||| |||||||| ||| ||||||||||||| |||| ||||    
T  45201999 tctagaagtcctaactcaattggcaaatgtcgaaattgtaaggtcggtcgtcgtgatccgagttcgaactcggaacctcacagttgtgtgtgagttt 45201903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 989 - 862
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  989 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 890  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  889 ttcagtggattaccacttcatctaagac 862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 70650 - 70523
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| |||||| ||||| ||||| |||| ||||||||||||||||| |||| ||||| |    
T  70650 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggtttgaacccgggacctcacagttgtgtgtgagtttatt 70551  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  70550 ttcagtggattaccacttcatctaagac 70523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 6602645 - 6602518
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  6602645 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 6602546  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  6602545 ttcagtggattaccacttcatctaagac 6602518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 6678098 - 6677971
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  6678098 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 6677999  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  6677998 ttcagtggattaccacttcatctaagac 6677971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 32333115 - 32333242
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  32333115 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 32333214  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  32333215 ttcagtggattaccacttcatctaagac 32333242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 45264766 - 45264640
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaattacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaatt 191  Q
    |||||||||||||||| |||||| |||||||||| |   |||||  |||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||    
T  45264766 tctagaagtcctaactcaactggcaaatgccgaaattgcaggtcgaacgtcgtgactcgggttcgaacccgggacctcacagttttgtgtgagtttaatt 45264667  T
Q  192 tcagtgaattaccactttatctaagac 218  Q
    |||||| ||||||||||  ||||||||    
T  45264666 tcagtggattaccacttcctctaagac 45264640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 1078775 - 1078648
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| || || ||||||||||||||||| || ||||| | |||||| |||||  ||||||||| ||||||||||||||||| |||| ||||| |    
T  1078775 tctagaagtcgtagctcaactggtaaatgccgaaattgcaaggccggacgtcatgacccaggttcgaacccgggacctcacagttgtgtgtgagtttatt 1078676  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  1078675 ttcagtggattaccacttcatctaagac 1078648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28817257 - 28817384
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||||| |||||| |||||||||| ||||| ||||||||||| |||| ||||| |    
T  28817257 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggatctcacagttgtgtgtgagtttatt 28817356  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  28817357 ttcagtggattaccacttcatctaagac 28817384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 31969847 - 31969720
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| || ||||| ||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| |||||| ||||  ||||||    
T  31969847 tctagaagtcatagcttaattggcaaatgccgaaatttcaaggccagacgtcatgatccgggttcgaacacgggacctcaaagttgtgtgtgaatttaat 31969748  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  31969747 ttcagtggtttaccacttcatctaagac 31969720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 35779624 - 35779497
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||||| || || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  35779624 tctagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 35779525  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  35779524 ttcagtggattaccacttcatctaagac 35779497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 42192766 - 42192639
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| | |||||||| ||||| ||||||||||| |||| ||||| |    
T  42192766 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgagttcgaacccgggatctcacagttgtgtgtgagtttatt 42192667  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  42192666 ttcagtggattaccacttcatctaagac 42192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 10963367 - 10963242
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| |||||||| |  |||| |||| || ||||||||| ||||||||||||||||  |||| ||||| |    
T  10963367 tctagaagtcctagctcaactggcaaatgccgaaattacaaggccgaacgttgtgatccaggttcgaacccgggacctcacagttg--tgtgagtttatt 10963270  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  10963269 ttcagtggattaccacttcatctaagac 10963242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 1467 - 1340
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| ||||||| || || ||||| | ||||| ||||||  ||||||||| ||||||||||||||||| |||| ||||| |    
T  1467 tctagaagttctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgaccctggttcgaacccgggacctcacagttgtgtgtgagtttatt 1368  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  1367 ttcagtggattaccacttcatctaagac 1340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 4531109 - 4530982
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || || ||| |||||||||| || |||||   |||||| ||||| |||||||||| ||||||||||||| ||| |||| |||||||    
T  4531109 tctagaagtcctagctcaattggcaaatgccgaaattgcaaggctggacgtcatgacccgggttcgaacccgggacctcacagctgtgtgtgagtttaat 4531010  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  4531009 ttcagtggtttaccacttcatctaagac 4530982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 7792662 - 7792789
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || |||||   ||||| ||||| ||||||||||| ||||| ||||||||||| |||| ||||| |    
T  7792662 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggctggacgttgtgactcgggttcgaacccgggatctcacagttgtgtgtgagtttatt 7792761  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| ||||| |||| |||||||||    
T  7792762 ttcagtggattactacttcatctaagac 7792789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 40911222 - 40911347
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| |||||||||| || ||||| | |||||||||||| |||||||||| ||||||||||||  ||| |||| |||||||    
T  40911222 tctagaagtgctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaac-cgggacctcacaactgtgtgtgagtttaat 40911320  T
Q  191 ttcagtgaattaccactttatctaaga 217  Q
    |||||||  ||||||||| ||||||||    
T  40911321 ttcagtggcttaccacttcatctaaga 40911347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 42885192 - 42885302
Alignment:
Q  110 aactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccact 207  Q
    |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||| ||||||||||| |||| ||||| |||||||| |||||||||    
T  42885192 aactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccact 42885291  T
Q  208 ttatctaagac 218  Q
    | |||||||||    
T  42885292 tcatctaagac 42885302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 7813323 - 7813447
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||| || |||||| ||| || ||||| | || || ||||| ||||||||||| ||||||||||||||||| |||| ||||| |    
T  7813323 tctagaagtcctagctcaaccggcaaatgctgaaattgcaaggccggatgttgtgactcgggttcgaacccgggacctcacagttgtgtgtgagtttatt 7813422  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||||| |||||||||| ||||||    
T  7813423 ttcagtggattaccacttcatctaa 7813447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 3822397 - 3822524
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| |||  | |||||| |||||||||| ||  |||||| ||||| |||||| |||||||||| | ||| ||||||||||| |||| |||||||    
T  3822397 tctagaagttctagttcaactggcaaatgccgaaattgtaaggtcggacgttgtgacccgggttcgaacccaggatctcacagttgtgtgtgagtttaat 3822496  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    || |||||||||||||||  ||||||||    
T  3822497 tttagtgaattaccacttcttctaagac 3822524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 5385385 - 5385456
Alignment:
Q  138 gacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactt 208  Q
    ||||||||||||  ||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  5385385 gacgtcgtgacccaggttcgaacccgggacctcacagttgtgtgtgagtttaatttcagtgatttaccactt 5385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 39303313 - 39303438
Alignment:
Q  96 agaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttt-aattt 192  Q
    |||||||||| || |||||| |||||||||| || ||||| | |||||| ||||  ||||| |||| || |||||||||||||| |||| |||| |||||    
T  39303313 agaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacatgggtttgaacccgagacctcacagttgtgtgtgagttttaattt 39303412  T
Q  193 cagtgaattaccactttatctaagac 218  Q
    ||||| |||||||||| |||||||||    
T  39303413 cagtggattaccacttcatctaagac 39303438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 12534845 - 12534720
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||| |||| ||||| | |||||||||| |||||||||||| | ||| ||||||||||   ||| ||||| |    
T  12534845 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgatccgggttcgaacccaggatctcacagttg--cgtgagtttatt 12534748  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  |||||||||| |||||||||    
T  12534747 ttcagtagattaccacttcatctaagac 12534720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 41849354 - 41849233
Alignment:
Q  97 gaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttca 194  Q
    |||||| ||| | |||||| |||||||||| || ||||||| |||||||||| | |||||||||  ||| ||||||| ||||| |||| |||||||||||    
T  41849354 gaagtcttaattcaactggcaaatgccgaaattgcaaggtcggacgtcgtgatctgggttcgaatccggaacctcactgttgtgtgtgagtttaatttca 41849255  T
Q  195 gtgaattaccactttatctaaga 217  Q
    ||| ||||||| || ||||||||    
T  41849254 gtg-attaccatttcatctaaga 41849233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 31532181 - 31532128
Alignment:
Q  162 gggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaa 215  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||| ||||||    
T  31532181 gggacctcacagttgtgtgtgagtttaatttcagtggattaccacttcatctaa 31532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 18752381 - 18752468
Alignment:
Q  131 aaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaaga 217  Q
    |||||| |||||||||| |||| ||||||| ||| |||| |||||||| ||||||||||||||||||| |||  ||||| || |||||    
T  18752381 aaggtcggacgtcgtgatcggggttcgaacccggaaccttacagttgtgtgtgggtttaatttcagtggattgacacttcatntaaga 18752468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 39435283 - 39435410
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| ||||| | || || ||||||| |||||| ||| | |||||||||| || |||||||||||||| |||| |||||||    
T  39435283 tctagaagttctagctcaactggcaaatgtcaaaattgcaaggtcggacgtcatgatctgggttcgaacccgagacctcacagttgtgtgtgagtttaat 39435382  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||  ||| ||||| |||| |||||||||    
T  39435383 ttatgtggattacgacttcatctaagac 39435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 13891149 - 13891218
Alignment:
Q  149 cgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||   ||||||||||||||| |||| ||||| ||||||||  ||||||||| |||||||||    
T  13891149 cgggttcgaacctaggacctcacagttgtgtgtgagtttattttcagtggtttaccacttcatctaagac 13891218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 2907054 - 2907142
Alignment:
Q  130 caaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttc-agtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||||||  |||| | |||||||||| |||| ||||||||||  ||||||||    
T  2907054 caaggtcggacgtcgtgatccgggtttgaacccgggacctcacagt--tatgggagtttaatttcaagtggattaccacttcgtctaagac 2907142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 7403782 - 7403696
Alignment:
Q  131 aaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaaga 217  Q
    |||||| ||||||||||| || |||||||  || ||| |||||||||| |||| | |||||||||||| |||||||||| ||||||||    
T  7403782 aaggtcggacgtcgtgactcgagttcgaatccgagacatcacagttgtttgtgagcttaatttcagtg-attaccacttcatctaaga 7403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 42364752 - 42364702
Alignment:
Q  168 tcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| |||| |||||||||||||   |||||||||||||||||||    
T  42364752 tcacagttgtgtgtgagtttaatttcagtagtttaccactttatctaagac 42364702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 18386709 - 18386806
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggttta 188  Q
    ||||||||| ||| || |||||  |||||| ||| || ||||||| || ||| |||| ||||||||||| ||||||||||||||||| |||| |||||    
T  18386709 tctagaagttctagctcaactgacaaatgctgaaattgcaaggtcggatgtcatgactcgggttcgaacccgggacctcacagttgtgtgtgagttta 18386806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 29425422 - 29425479
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||| ||| || |||| |||| |||||||||||||| |||||||||| |||||||||    
T  29425422 cgggatctcgcaattgtgtgtgagtttaatttcagtggattaccacttcatctaagac 29425479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 31695334 - 31695269
Alignment:
Q  153 ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||||| |||| |||| ||||||||||| ||  ||||||||| |||||||||    
T  31695334 ttcgaacctgggacctcacaattgtgtgtgagtttaatttcaatggtttaccacttcatctaagac 31695269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 9775110 - 9775042
Alignment:
Q  150 gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| ||| ||||||||||| | |||| ||||||||| | || ||||| |||| |||||||||    
T  9775110 gggttcgaacccggaacctcacagttatgtgtgagtttaatttgaatggattacaacttcatctaagac 9775042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 33621495 - 33621622
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| |||||||    
T  33621495 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttaat 33621594  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  33621595 ttcagtggtttaccacttcatctaagac 33621622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 33704217 - 33704344
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  33704217 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 33704316  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| || ||||||    
T  33704317 ttcagtggattaccacttcatttaagac 33704344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 21000693 - 21000820
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| |  ||||| ||||| |||||||||| |||||||||||| |||| ||||||||||||    
T  21000693 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccgtacgtcatgacctgggttcgaacccgggacctcacaattgtgtgtgggtttaat 21000792  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||| ||||    
T  21000793 ttcagtggtttaccacttcatctgagac 21000820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28322933 - 28323060
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| ||  |||| | |||||| ||| |||||||||||| |||||||||||| |||| |||| ||||| |    
T  28322933 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagt 28323032  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  28323033 ttcagtggtttaccacttcatctaagac 28323060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 4464152 - 4464255
Alignment:
Q  117 aaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatcta 214  Q
    |||||||||| || ||||| | |||||| ||| ||||||||||||  |||||||||||||||| |||| ||||||||||||||  ||||||||| |||||    
T  4464152 aaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacctgggacctcacagttgtgtgtgagtttaatttcagtggtttaccacttcatcta 4464251  T
Q  215 agac 218  Q
    ||||    
T  4464252 agac 4464255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 21037292 - 21037418
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgac-cgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| |||||| ||| || ||||| | ||||| ||||| ||||||||||  ||| ||||||||||||| |||| ||||| |    
T  21037292 tctagaagttctagctcaactggcaaatgctgaaattgcaaggccggacgttgtgactcgggttcgaatccgg-acctcacagttgtgtgtgagtttatt 21037390  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||||||||||||| |||||||||    
T  21037391 ttcagtgaattaccacttcatctaagac 21037418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 361070 - 361139
Alignment:
Q  149 cgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||| ||| ||||||||||| |||||| |||||||||||||| |||| ||||| |||||||||    
T  361070 cgggttcgaacccggaacctcacagttatatgtgagtttaatttcagtggattaacacttcatctaagac 361139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 19145505 - 19145598
Alignment:
Q  125 aattacaaggtcagacgtcgtgaccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||| | |||||||||||| | || |||| |||||||||||| |||| ||||  ||||||||||||| |||||||||| |||||||||    
T  19145505 aattgcaaggccggacgtcgtgacccgttttgaacccgggacctcacaattgtgtgtgaatttaatttcagtggattaccacttcatctaagac 19145598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 29009715 - 29009650
Alignment:
Q  153 ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||  |||||||||||||||| |||| ||||| ||| ||||||||||||||| |||||||||    
T  29009715 ttcgaacctgggacctcacagttgtgtgtgagtttatttttagtgaattaccacttcatctaagac 29009650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 35218697 - 35218640
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  35218697 cgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 35218640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 2959150 - 2959277
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||| | |||||||||| || ||||| | ||  |||||||   ||||||||| || |||||||||||||| |||| |||||||    
T  2959150 tctagaagtcctaactcaactagcaaatgccgaaattgcaaggccggatatcgtgacttaggttcgaacccgagacctcacagttgtgtgtgagtttaat 2959249  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||| ||| | |||||||| |||| ||||    
T  2959250 ttccgtggaataccacttcatcttagac 2959277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 11572048 - 11572106
Alignment:
Q  131 aaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttta 188  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||| |||| |||||    
T  11572048 aaggccagacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagttta 11572106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 10999459 - 10999418
Alignment:
Q  167 ctcacagttgtatgtgggtttaatttcagtgaattaccactt 208  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  10999459 ctcacagttgtatgtgagtttaatttcagtggattaccactt 10999418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 16518457 - 16518549
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||||| ||||| |||||| |||||||||| | ||| ||||||||||  |||| ||||| |||||||| ||||||| || |||||||||    
T  16518457 aattgcaaggtcggacgttgtgacctgggttcgaacccaggagctcacagttg--tgtgagtttattttcagtggattaccatttcatctaagac 16518549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 28592182 - 28592128
Alignment:
Q  164 gacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||||| |||| ||||| ||||| || ||||||| ||||||||||||    
T  28592182 gacctcacagttgtgtgtgagtttattttcaatggattaccaatttatctaagac 28592128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 32289408 - 32289473
Alignment:
Q  153 ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||| || |||||||||||||| |||  ||||| | ||||||||||||||||| ||| |||||    
T  32289408 ttcgaactcgagacctcacagttgtgtgtaagtttattatcagtgaattaccacttcatcaaagac 32289473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 24619159 - 24619079
Alignment:
Q  139 acgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||| | |||||| | || ||||||| | |||| |||| |||||||||||||  |||||||||| |||||||||    
T  24619159 acgtcgtgacccgagttcgatcccgtgacctcataattgtgtgtgagtttaatttcagtcgattaccacttcatctaagac 24619079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 13203958 - 13204085
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||||||||| |||||||||| ||||||||||||||| | |||| ||||| |    
T  13203958 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttatt 13204057  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  13204058 ttcagtggattaccacttcatctaagac 13204085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 27721432 - 27721549
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||| ||| |||||||||||| ||||| |||| ||||||||||||||||||||||  ||||||    
T  27721432 tctagaagtcctagctcaactggaaaatgccgaaattgcaaagtcggacgtcgtgacccgggtttgaacccgggacctcacagttgtatgtgaatttaat 27721531  T
Q  191 ttcagtgaattaccactt 208  Q
    ||||||| ||||||||||    
T  27721532 ttcagtggattaccactt 27721549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 35317824 - 35317697
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| |||||  ||||| ||| |||||| ||||||||||||||||| |||| ||||| |    
T  35317824 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgttatgacctggggtcgaacccgggacctcacagttgtgtgtgagtttatt 35317725  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  35317724 ttcagtggattaccacttcatctaagac 35317697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 21018224 - 21018351
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||||| || || | ||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  21018224 tctagaagtcctagctcaactggcaaatgccaaaattgcgaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 21018323  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  21018324 ttcagtggattaccacttcatctaagac 21018351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 29265876 - 29266003
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||| | ||||| |||| ||||||||||  | || |||||| || ||||||| ||||||||||||||||| |||| ||||| |    
T  29265876 tctagaagtcctaactcaactagaaaatgtcgaaattacaaggtcgaatgttgtgacccggattcgaacccgggacctcacagttgtgtgtgagtttatt 29265975  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  29265976 ttcagtggattaccacttcatctaagac 29266003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 31909479 - 31909385
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||| |||||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  31909479 aattgcaaggccagacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 31909385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 4825068 - 4824939
Alignment:
Q  91 aatctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggttta 188  Q
    ||||||||||||||| || |||||| |||||||||| || ||||| | ||||| ||||||  ||||| ||| ||||||||||||||||| |||| |||||    
T  4825068 aatctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccaggttcaaacccgggacctcacagttgtgtgtgagttta 4824969  T
Q  189 atttcagtgaattaccactttatctaagac 218  Q
     ||||| || |||||||||| |||||||||    
T  4824968 ttttcaatggattaccacttcatctaagac 4824939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 1191667 - 1191543
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||| |||| || ||||| | |||||||||| |||||||||||| |||||||||||| |||| |||| |||||||    
T  1191667 tctagaagtcctagctcaactggcaaatgacgaaattgcaaggccggacgtcgtgatccgggttcgaacccgggacctcacaattgtgtgtgagtttaat 1191568  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    |||||||  |||| |||| ||||||    
T  1191567 ttcagtggcttacaacttcatctaa 1191543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 2970985 - 2971112
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||||| |||||| |||| ||  |||||||||||| |||||| ||||||||||  | |||||||||||||| |||| ||||| |    
T  2970985 tctagaagtcctagctcaactgataaatgtcgaaattgtaaggtcagacgttgtgacccgggttcgaacctgagacctcacagttgtgtgtgagtttatt 2971084  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||| ||| |||||||||| |||||||||    
T  2971085 ttcggtggattaccacttcatctaagac 2971112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 12257357 - 12257484
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||| ||||  |||| ||||||| |||||| |||||||||| | |||||||| | |||| |||| ||||| |    
T  12257357 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccagacgttgtgacctgggttcgaacccaggacctcataattgtgtgtgagtttatt 12257456  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  12257457 ttcagtggattaccacttcatctaagac 12257484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 9577088 - 9576985
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||| | | |||||||||||||||||| |||||||    
T  9577088 tctagaagtcctagctcaactggcaaatgctgaaattgcaaggccagacgtcatgacctgggttcgaacccagaacctcacagttgtatgtgagtttaat 9576989  T
Q  191 ttca 194  Q
    ||||    
T  9576988 ttca 9576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 6020995 - 6021117
Alignment:
Q  95 tagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaattt 192  Q
    |||||||||||||| || ||| ||||| | || || ||||| | ||||| |||||| || ||||||| ||||||||| ||||||| |||| ||||| |||    
T  6020995 tagaagtcctaactcaattggcaaatgtcaaaattgcaaggcctgacgttgtgacccggattcgaacccgggacctctcagttgtgtgtgagtttatttt 6021094  T
Q  193 cagtgaattaccactttatctaa 215  Q
    ||||| |||||||||||||||||    
T  6021095 cagtggattaccactttatctaa 6021117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 8734000 - 8734125
Alignment:
Q  96 agaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtg-ggtttaattt 192  Q
    |||||||||| || |||||| |||||| ||| || ||||| | ||||||||||||  ||||||||| ||| |||||||||||||| ||| | ||||| ||    
T  8734000 agaagtcctagctcaactggcaaatgctgaaattgcaaggccggacgtcgtgacctaggttcgaacccggaacctcacagttgtacgtgagttttaactt 8734099  T
Q  193 cagtgaattaccactttatctaagac 218  Q
    ||||| |||||||||| |||||||||    
T  8734100 cagtggattaccacttcatctaagac 8734125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 35545996 - 35546061
Alignment:
Q  153 ttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||    
T  35545996 ttcgaacctgggacctcacagttgtatgtgggtttaatttaagtggattatcacttcatctaagac 35546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 32143471 - 32143414
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  32143471 cgggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 32143414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 11124653 - 11124780
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||| | || || ||||| | ||||||||||||  | ||||||| | | |||||| | || ||||||||||||||    
T  11124653 tctagaagtcctagctcaactggcaaatgtcaaaattgcaaggccggacgtcgtgaccttgattcgaacccagaacctcataattttatgtgggtttaat 11124752  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    || |||| |||||||||| |||||||||    
T  11124753 ttgagtggattaccacttcatctaagac 11124780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 40177625 - 40177749
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| ||||||||  ||||| || |||| ||||| | ||||| |||||| || ||| ||| ||| || |||| ||||| |||| ||||| |    
T  40177625 tctagaagtcctagcttaactgacaaatgtcgaaattgcaaggccggacgttgtgacctggattccaacccggaacttcaccgttgtgtgtgagtttatt 40177724  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||||| |||||||||| ||||||    
T  40177725 ttcagtggattaccacttcatctaa 40177749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 2786272 - 2786398
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||| | || ||| |||||||| ||||  |||||| |||| ||||| |||  ||| |||  |||||||||||||||| | || ||||||     
T  2786272 tctagaagtcctaattcaattggcaaatgccgaaattgtaaggtcggacgccgtgatccgaattcaaacctgggacctcacagttgtgtatgagtttaa- 2786370  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  2786371 ttcagtggattaccacttcatctaagac 2786398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 17984811 - 17984745
Alignment:
Q  149 cgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaa 215  Q
    ||||||||||| ||| ||||||||||||| |||| ||||||||| ||||  ||| ||||| ||||||    
T  17984811 cgggttcgaacccggaacctcacagttgtgtgtgagtttaattttagtggcttatcacttcatctaa 17984745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 1173952 - 1174079
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  1173952 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacctgggttcgaacccgggacctcacagttgtgtgtgagtttatt 1174051  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  1174052 ttcagtggattaccacttcatctaagac 1174079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 34739281 - 34739408
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  34739281 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 34739380  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  34739381 ttcagtggattaccacttcatctaagac 34739408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 53457825 - 53457952
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| |||||| ||||| |||||||||  ||||||||||||||||| |||| ||||| |    
T  53457825 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggttcgaatccgggacctcacagttgtgtgtgagtttatt 53457924  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  53457925 ttcagtggattaccacttcatctaagac 53457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 55400223 - 55400356
Alignment:
Q  87 tattaatctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtggg 184  Q
    ||||| ||||||| |||||||| ||||||||||||||||| || ||||| | |||||| ||| |||| ||||||| ||| |||||| ||||||||||| |    
T  55400223 tattagtctagaaatcctaactcaactggtaaatgccgaaattgcaaggccggacgtcatgatccggattcgaactcggaacctcatagttgtatgtgag 55400322  T
Q  185 tttaatttcagtgaattaccactttatctaagac 218  Q
    |||| |||||||| |||||||||| |||||||||    
T  55400323 tttattttcagtggattaccacttcatctaagac 55400356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 19849630 - 19849503
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||||||| |||||||||||| ||||||||||||||||| |||| ||||| |    
T  19849630 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 19849531  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||| ||  ||||||||| |||||||||    
T  19849530 ttcaatggtttaccacttcatctaagac 19849503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 26424984 - 26424858
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  26424984 tctagaagtcctagctcaactggcaaatgccgaaattgcaagg-cggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 26424886  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  26424885 ttcagtggattaccacttcatctaagac 26424858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 28798515 - 28798388
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||  | |||||| |||||||||| || ||||| | |||||||||||| |||||||||| |||||||| |||||||| |||| ||||| |    
T  28798515 tctagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggaccttacagttgtgtgtgagtttatt 28798416  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  28798415 ttcagtggattaccacttcatctaagac 28798388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 43140033 - 43139906
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  43140033 tctagaagttctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 43139934  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  43139933 ttcagtggattaccacttcatctaagac 43139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 55214648 - 55214779
Alignment:
Q  88 attaatctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggt 185  Q
    |||| |||||||||| ||||| |||||  ||||||| || || ||||| | |||||||||||| |||||||||| ||||||||||||||||| | || ||    
T  55214648 attagtctagaagtcttaactcaactgtcaaatgccaaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtatgagt 55214747  T
Q  186 ttaatttcagtgaattaccactttatctaaga 217  Q
    ||| |||||||| |||||||||||||||||||    
T  55214748 ttattttcagtggattaccactttatctaaga 55214779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 18257330 - 18257457
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||| |||||||||| | |||||||||||||||||  ||| ||||| |    
T  18257330 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgatccgggttcgagcccgggacctcacagttgtgcgtgagtttatt 18257429  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  18257430 ttcagtggattaccacttcatctaagac 18257457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 45874056 - 45874183
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  ||||||| || || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  45874056 tctagaagtcctagctcaactgacaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 45874155  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  45874156 ttcagtggattaccacttcatctaagac 45874183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 39807865 - 39807962
Alignment:
Q  113 tggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactt 208  Q
    |||||||||||||| || ||||| ||||| |||||||| | |||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  39807865 tggtaaatgccgaaattgcaaggccagacatcgtgacccgagttcgaactcgggacctcacagttgtgtgtgagtttaatttcagtggattaccactt 39807962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 54768559 - 54768432
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| | ||||||||||||||| || | ||||  |    
T  54768559 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccaggacctcacagttgtgtgcgagtttttt 54768460  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  54768459 ttcagtggattaccacttcatctaagac 54768432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 12735471 - 12735559
Alignment:
Q  131 aaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||||| |||||| |||||||||| | ||||||||||||||| |||| ||||| |||||||| |||||||||| |||||||||    
T  12735471 aaggccagacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattaccacttcatctaagac 12735559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 238585 - 238458
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  |||||||||| || |||||   |||| | ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  238585 tctagaagtcctagctcaactgtcaaatgccgaaattgcaaggctggacgccatgacctgggttcgaacccgggacctcacagttgtgtgtgagtttatt 238486  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| ||| |||||    
T  238485 ttcagtggattaccacttcatcgaagac 238458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 12867842 - 12867969
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||  |||||||||| || ||||||| |||||||||||| | ||||||||  |||| |||||||||||  ||| ||||| |    
T  12867842 tctagaagttctagctcaactgtcaaatgccgaaattgcaaggtcggacgtcgtgacccgagttcgaacctgggatctcacagttgtgagtgagtttatt 12867941  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  12867942 ttcagtggattaccacttcatctaagac 12867969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 2075565 - 2075633
Alignment:
Q  150 gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||| ||| ||| |||||||||||||||    
T  2075565 gggttcgaacccgggacctcacagttatgtgtgagtttaatttcaatgatttatcactttatctaagac 2075633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 23417603 - 23417483
Alignment:
Q  100 gtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtg 197  Q
    |||||| || |||||| ||||||| || || ||||| | ||||| |||||| |||||||||| |||||| | |||||||| |||| ||||| ||||||||    
T  23417603 gtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggactttacagttgtgtgtgagtttattttcagtg 23417504  T
Q  198 aattaccactttatctaagac 218  Q
     |||||||||| |||||||||    
T  23417503 gattaccacttcatctaagac 23417483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 1966611 - 1966678
Alignment:
Q  151 ggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||  ||||||||||||||||| |||| |||||||||||||| ||||| |||| |||||||||    
T  1966611 ggttcgaattcgggacctcacagttgtgtgtgagtttaatttcagtggattacaacttcatctaagac 1966678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 23710460 - 23710337
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| || || |||||||||||| |||| || ||||| | |||||||||||| || |||||||  || |||||||||||   |||| |||||||    
T  23710460 tctagaagtcatagctcaactggtaaatgtcgaaattgcaaggccggacgtcgtgacccggattcgaacctggaacctcacagttacgtgtgagtttaat 23710361  T
Q  191 ttcagtgaattaccactttatcta 214  Q
    ||||||| |||||||||| |||||    
T  23710360 ttcagtggattaccacttcatcta 23710337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 11277983 - 11278106
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | ||| || ||||| |||||| ||| |||||||||||||||||    | |||||||    
T  11277983 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacatcatgacccgggttcaaacccgggacctcacagttgt----gagtttaat 11278078  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  11278079 ttcagtggtttaccacttcatctaagac 11278106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 19225261 - 19225387
Alignment:
Q  94 ctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatt 191  Q
    |||||||||||| || |||||| |||||||||| ||  || | | |||||| ||| |||||||||||| |||||||||||| ||||  ||| ||||| ||    
T  19225261 ctagaagtcctagctcaactggcaaatgccgaaattgtaaagccggacgtcatgatccgggttcgaacccgggacctcacaattgtgcgtgagtttagtt 19225360  T
Q  192 tcagtgaattaccactttatctaagac 218  Q
    ||||||  ||||||||| |||||||||    
T  19225361 tcagtggtttaccacttcatctaagac 19225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 22608019 - 22608113
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||| | |||||||||||| |||||||||| ||||||||||||||||| | || ||||||||||| || ||||| |||| |||| ||||    
T  22608019 aattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtctgagtttaatttcaatggattactacttcatctgagac 22608113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 29581137 - 29581044
Alignment:
Q  125 aattacaaggtcagacgtcgtgaccg-ggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||| | ||||||||||||  ||||||||| || |||||||||||||| |||| ||||||||| |||| |||||||||| |||||||||    
T  29581137 aattgcaaggccggacgtcgtgacctaggttcgaacccgagacctcacagttgtgtgtgagtttaattt-agtggattaccacttcatctaagac 29581044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 37134049 - 37134166
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||  | |||||| |||||| ||| |||||||||| || ||| ||| |||||||||||| ||  || |||||||||| |||| |||||||    
T  37134049 tctagaagtcctagttcaactggcaaatgctgaaattacaaggtcggatgtcatgatccgggttcgaacccgaaacttcacagttgtgtgtgagtttaat 37134148  T
Q  191 ttcagtgaattaccactt 208  Q
    |||||||  |||||||||    
T  37134149 ttcagtggtttaccactt 37134166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 19674056 - 19673929
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||| || || ||||||||||||  ||| || ||||| |  |||| |||||| |||||||||| |||||||||||| || | || | |||||||    
T  19674056 tctagaagtcttagctcaactggtaaatgtagaaattgcaaggccgaacgttgtgacctgggttcgaacccgggacctcacaattatgtgcgagtttaat 19673957  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| || ||||||    
T  19673956 ttcagtggattaccacttcatttaagac 19673929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 23532118 - 23532165
Alignment:
Q  161 cgggacctcacagttgtatgtgggtttaatttcagtgaattaccactt 208  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||    
T  23532118 cgggacttcacagttgtgtgtgagtttaatttcagtgaattaccactt 23532165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 32441211 - 32441125
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgt 177  Q
    ||||||||||||| || |||||| ||||| |||| || ||||| ||||| || ||||| |||||||||| |||||||||||||||||    
T  32441211 tctagaagtcctagctcaactggcaaatgtcgaaattgcaaggccagacatcatgacccgggttcgaacccgggacctcacagttgt 32441125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 50033440 - 50033510
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||| | ||| |||||||||| |||  ||||||||||| ||||||||||||| || ||||||    
T  50033440 ccgggttcgaacatgagacatcacagttgtgtgtaagtttaatttcaatgaattaccacttcatataagac 50033510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 31015057 - 31015110
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||| |||| ||||||||||||||  ||||||||| |||||||||    
T  31015057 acctcacagttgtgtgtgagtttaatttcagtgctttaccacttcatctaagac 31015110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 51287641 - 51287730
Alignment:
Q  131 aaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttt-aatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||||||| | |||||  ||| ||  ||||||||||||| |||| |||| |||||||||||||||||| || |||||||||    
T  51287641 aaggtcagacgtcgtgatctgggtttaaacccgaaacctcacagttgtgtgtgagttttaatttcagtgaattaccatttcatctaagac 51287730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 52172043 - 52171990
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||| |||| |||| |||||||||||||| ||||||||||||| ||||||    
T  52172043 acctcacaattgtgtgtgagtttaatttcagtggattaccactttatttaagac 52171990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 33770628 - 33770696
Alignment:
Q  150 gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| |||||| ||| |||||| |||| ||||||||||||||  ||||| ||| |||||||||    
T  33770628 gggttcgaacccgggacttcatagttgtgtgtgagtttaatttcagtggtttaccgcttcatctaagac 33770696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 12767088 - 12767191
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||||||||||||||||| ||  ||| || |||||| ||| | |||||||||  ||  ||||||||||||| |||| |||||||    
T  12767088 tctagaagtcctagctcaactggtaaatgccgaaattgtaagatcggacgtcatgatctgggttcgaatccgaaacctcacagttgtgtgtgagtttaat 12767187  T
Q  191 ttca 194  Q
    ||||    
T  12767188 ttca 12767191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 32778159 - 32778238
Alignment:
Q  125 aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattacca 205  Q
    |||| ||||||| |||||||||| ||||||||||||||| ||||||||| |||  |||| ||||| ||| |||| |||||||    
T  32778159 aattgcaaggtcggacgtcgtgatccgggttcgaacacgagacctcacaattg--tgtgagtttatttttagtggattacca 32778238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 16555382 - 16555435
Alignment:
Q  165 acctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    ||||||||||||| ||||  |||||||| | ||||||||||||| |||||||||    
T  16555382 acctcacagttgtgtgtgaatttaattttaatgaattaccacttcatctaagac 16555435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 19814152 - 19814229
Alignment:
Q  138 gacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatcta 214  Q
    |||||||||||| |||||| |||  ||||||||||| || | |||| |||||||||||||  |||||||||| |||||    
T  19814152 gacgtcgtgacctgggttcaaacctgggacctcacaattatgtgtgagtttaatttcagttgattaccacttcatcta 19814229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 2864875 - 2864751
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgcc-gaattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||||| |||||||  |||| |||||   |||||||||| ||||||||||||   | |||||| |||||| |||| | |||||    
T  2864875 tctagaagtcctaactcaactggcaaatgcctaaattgcaaggcgggacgtcgtgacccgggttcgaacctagaacctcagagttgtgtgtgagcttaat 2864776  T
Q  191 ttcagtgaattaccactttatctaa 215  Q
    ||||  |  ||||||||| ||||||    
T  2864775 ttcaaaggtttaccacttcatctaa 2864751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 37620677 - 37620745
Alignment:
Q  150 gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| |||||  |||||| | | |||| |||||||||||||| |||||||||| ||| |||||    
T  37620677 gggttcgaacccgggatatcacaggtttgtgtgagtttaatttcagtggattaccacttcatcaaagac 37620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 7824581 - 7824454
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  7824581 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 7824482  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  7824481 ttcagtggattaccacttcatctaagac 7824454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 29689609 - 29689482
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  29689609 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 29689510  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  29689509 ttcagtggattaccacttcatctaagac 29689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 54158267 - 54158394
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||| |||||||||||| ||||||||||||||||| |||| ||||| |    
T  54158267 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 54158366  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  54158367 ttcagtggattaccacttcatctaagac 54158394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 9349786 - 9349679
Alignment:
Q  110 aactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccact 207  Q
    |||||| |||||||||| || ||||||| |||||||||| |||||||||||| ||||||||||||||||| |||| ||||| |||||||| |||||||||    
T  9349786 aactggcaaatgccgaaattgcaaggtcggacgtcgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattaccact 9349687  T
Q  208 ttatctaa 215  Q
    | ||||||    
T  9349686 tcatctaa 9349679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 42392932 - 42392805
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||||| |||||| ||| ||||| |||||| |||||||||||| |||| |||| |||||||    
T  42392932 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgatccgggctcgaacccgggacctcacaattgtgtgtgagtttaat 42392833  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  42392832 ttcagtggtttaccacttcatctaagac 42392805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 43247777 - 43247650
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||||| || || ||||| | ||||| |||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  43247777 tctagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacctgggttcgaacccgggacctcacagttgtgtgtgagtttatt 43247678  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  43247677 ttcagtggattaccacttcatctaagac 43247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 51666052 - 51665925
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||| |||| ||||| | |||||| ||||| |||||||||| |||||||| |||||||| |||| ||||| |    
T  51666052 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacctgggttcgaacccgggaccttacagttgtgtgtgagtttatt 51665953  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  51665952 ttcagtggattaccacttcatctaagac 51665925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 54151808 - 54151681
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||||||||||||||||| | || ||||| |    
T  54151808 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtatgagtttatt 54151709  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  54151708 ttcagtggattaccacttcatctaagac 54151681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 55018161 - 55018044
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||||| |||||| ||||| | || || ||||| | |||||||||||| |||||||||| ||||||||||||||||| |||| ||||| |    
T  55018161 tctagaagtcctaactcaactggcaaatgtcaaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 55018062  T
Q  191 ttcagtgaattaccactt 208  Q
    ||||||| ||||||||||    
T  55018061 ttcagtggattaccactt 55018044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 4601426 - 4601553
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||| ||||| |||||||||| ||| ||||||||||||| |||| ||||| |    
T  4601426 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccggaacctcacagttgtgtgtgagtttatt 4601525  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| ||||||| || |||||||||    
T  4601526 ttcagtggattaccagttcatctaagac 4601553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 475374 - 475281
Alignment:
Q  125 aattacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||| ||||||| |||||| ||| |||||||||||| ||| ||||||||||||| |||| |||||| |||||||||||||||||| |||||||||    
T  475374 aattgcaaggtcggacgtcatgatccgggttcgaactcggaacctcacagttgtgtgtgagtttaa-ttcagtgaattaccacttcatctaagac 475281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 36229104 - 36228994
Alignment:
Q  110 aactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccact 207  Q
    |||||| |||||||||| || ||||| | |||||| ||| |||||||||||| ||||||||||||||||| |||| ||||| ||||| || |||||||||    
T  36229104 aactggcaaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcaatggattaccact 36229005  T
Q  208 ttatctaagac 218  Q
    | |||||||||    
T  36229004 tcatctaagac 36228994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 3113105 - 3112995
Alignment:
Q  110 aactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccact 207  Q
    |||||| |||||||||| || ||||| | |||||||| ||| | |||||||| ||||| ||||||||||| |||| ||||| |||||||| |||||||||    
T  3113105 aactggcaaatgccgaaattgcaaggccggacgtcgtaacccgagttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattaccact 3113006  T
Q  208 ttatctaagac 218  Q
    | |||||||||    
T  3113005 tcatctaagac 3112995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 38257397 - 38257304
Alignment:
Q  125 aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaaga 217  Q
    |||| ||||||| |||||||||||| |||||||||| | | |||||||| |||| |||| |||||||||||| | |||||||||| ||||||||    
T  38257397 aattgcaaggtcggacgtcgtgacctgggttcgaacccagaacctcacaattgtgtgtgagtttaatttcagcggattaccacttcatctaaga 38257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 40756855 - 40756728
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacg-tcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaa 189  Q
    |||||||||||||||| |||||  ||||||| || || |||||||||||| || ||| |||| ||||||| || |||||||||||||  |||| ||||||    
T  40756855 tctagaagtcctaactcaactgaaaaatgccaaaattgcaaggtcagacgatcatgatccggattcgaacccgagacctcacagttgcgtgtgagtttaa 40756756  T
Q  190 tttcagtgaattaccactttatctaaga 217  Q
    |||||||   ||||||||| ||||||||    
T  40756755 tttcagtagtttaccacttcatctaaga 40756728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 43775224 - 43775351
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||| |||| |||||| |||||| |||||||||| ||  |||||| ||||| |||||  | |||||||  ||| | ||||||||||||| || |||||||    
T  43775224 tctaaaagttctaactcaactggcaaatgccgaaattgtaaggtcggacgttgtgacttgcgttcgaatccggaatctcacagttgtatttgagtttaat 43775323  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  43775324 ttcagtggattaccacttcatctaagac 43775351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 50729525 - 50729652
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||  |||||||||| ||  ||||||||||||||||| | || |||||||| | |||||| ||||| |||||| |||||||    
T  50729525 tctagaagttctagctcaactgacaaatgccgaaattgtaaggtcagacgtcgtgatctggattcgaacatgagacctcgcagttttatgtgagtttaat 50729624  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||| |  |||||||||| |||||||||    
T  50729625 ttcaatagattaccacttcatctaagac 50729652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 50783324 - 50783197
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccggg-ttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||  |||||||||| ||  ||||||||||||||||| | || |||||||| | |||||| ||||| |||||| |||||||    
T  50783324 tctagaagttctagctcaactgacaaatgccgaaattgtaaggtcagacgtcgtgatctggattcgaacatgagacctcgcagttttatgtgagtttaat 50783225  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||| |  |||||||||| |||||||||    
T  50783224 ttcaatagattaccacttcatctaagac 50783197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 35461606 - 35461504
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||| ||| || |||||| |||||||||| || ||||||| ||||| |||| |||||||||||| ||| ||||||||||||| |||| ||||| |    
T  35461606 tctagaagttctagctcaactggcaaatgccgaaattgcaaggtcggacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgagtttatt 35461507  T
Q  191 ttc 193  Q
    |||    
T  35461506 ttc 35461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28844505 - 28844633
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttta-a 189  Q
    ||||||||| ||| || |||||  |||||||||| || ||||| | ||||| |||||| ||||||||||  || ||||||||||||| |||| |||||      
T  28844505 tctagaagttctagctcaactgacaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacctggaacctcacagttgtgtgtgagtttatt 28844604  T
Q  190 tttcagtgaattaccactttatctaagac 218  Q
    |||||||| |||||||||| |||||||||    
T  28844605 tttcagtggattaccacttcatctaagac 28844633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32001551 - 32001424
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || ||||||||||||||||| ||  |||| |  || || ||| || ||||||||| || || ||||||||||| |||| ||||| |    
T  32001551 tctagaagtcctacctcaactggtaaatgccgaaattgtaaggccgaacatcttgaaccaggttcgaactcgagatctcacagttgtgtgtgagtttatt 32001452  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||| ||||||||| || ||||||    
T  32001451 ttcagtgatttaccacttcatataagac 32001424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 33334609 - 33334736
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgg-gttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||| | |||||||||| || ||| | | ||||| |||||| | |||||||  ||||||||||||||||| |||| |||||||    
T  33334609 tctagaagtcctagctcaacttgcaaatgccgaaattgcaaagccggacgttgtgacctgagttcgaatccgggacctcacagttgtgtgtgagtttaat 33334708  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  |||| ||||| || ||||||    
T  33334709 ttcagtagattatcacttcatataagac 33334736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 52500839 - 52500966
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| ||||| |||| ||  |||| | |||||| ||| ||||||||||||  |  ||||||||||||| |||| ||||| |    
T  52500839 tctagaagtcctagctcaactggcaaatgtcgaaattgtaaggccggacgtcatgatccgggttcgaacctgaaacctcacagttgtgtgtgagtttatt 52500938  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  |||||||||| |||||||||    
T  52500939 ttcagtagattaccacttcatctaagac 52500966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 28458664 - 28458790
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgaccgggttcgaacacgggacctcacagttgtatgtgggtttaatt 191  Q
    |||||||||||||||| |||||  ||||| |||| || ||||| |||| ||||||| | |||| |||| | | ||||||||||||  |||  |||||| |    
T  28458664 tctagaagtcctaactcaactgacaaatgtcgaaattgcaaggccagatgtcgtgatccggtttgaacccagaacctcacagttgcgtgtaagtttaact 28458763  T
Q  192 tcagtgaattaccactttatctaagac 218  Q
    ||| | ||||||||||| |||||||||    
T  28458764 tcaataaattaccacttcatctaagac 28458790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 7958627 - 7958694
Alignment:
Q  148 ccgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaa 215  Q
    |||||||||||| ||||||||||||||| | |||  ||||| ||| |||| |||||||||| ||||||    
T  7958627 ccgggttcgaacccgggacctcacagttatgtgtaagtttatttttagtggattaccacttcatctaa 7958694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 47635132 - 47635005
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccg-aattacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    |||||||||||||| | |||||||||||   | |||| ||||||| ||| | |||||| |||||||||  | ||||||| ||||| | |||  |||||||    
T  47635132 tctagaagtcctaattcaactggtaaattttggaattgcaaggtcggacattgtgacctgggttcgaatccaggacctcgcagttatgtgtaagtttaat 47635033  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||  |||||||||| |||||||||    
T  47635032 ttcagttgattaccacttcatctaagac 47635005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 27230744 - 27230794
Alignment:
Q  168 tcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||| ||||  |||||||||||||||||||||||| |||| ||||    
T  27230744 tcacagttgtgtgtgaatttaatttcagtgaattaccacttcatctcagac 27230794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 448930 - 448885
Alignment:
Q  163 ggacctcacagttgtatgtgggtttaatttcagtgaattaccactt 208  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||||||    
T  448930 ggacctcacagttgtttgtgagtttaattttagtggattaccactt 448885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 1778852 - 1778977
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||  |||||||||| || ||||| | ||| | |||||| |||||||||| ||| |||||||| |||| | ||  |||| |    
T  1778852 tctagaagtcctagctcaactgacaaatgccgaaattgcaaggccggacattgtgacccgggttcgaacccggaacctcacaattgtgtttgaatttatt 1778951  T
Q  191 ttcagtgaattaccactttatctaag 216  Q
    |||| || |||||||||| |||||||    
T  1778952 ttcaatggattaccacttcatctaag 1778977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 14078 - 13951
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||| ||||| || ||||| | ||||| |||| |||||||||||| ||||||||||||||||| |||| ||||| |    
T  14078 tctagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 13979  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  13978 ttcagtggattaccacttcatctaagac 13951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 19758 - 19631
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||| ||||| || ||||| | ||||| |||| |||||||||||| ||||||||||||||||| |||| ||||| |    
T  19758 tctagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatt 19659  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  19658 ttcagtggattaccacttcatctaagac 19631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 10100 - 9973
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| || ||||| | |||||||| ||| |||||||||| |||||||||| |||||| |||| ||||| |    
T  10100 tctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtaacccgggttcgaacccgggacctcatagttgtgtgtgagtttatt 10001  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    ||||||| |||||||||| |||||||||    
T  10000 ttcagtggattaccacttcatctaagac 9973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 114253 - 114380
Alignment:
Q  93 tctagaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtga-ccgggttcgaacacgggacctcacagttgtatgtgggtttaat 190  Q
    ||||||||||||| || |||||| |||||||||| ||  |||| | |||||| ||| |||||||||||| |||||||||||| |||| |||| ||||| |    
T  114253 tctagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagt 114352  T
Q  191 ttcagtgaattaccactttatctaagac 218  Q
    |||||||  ||||||||| |||||||||    
T  114353 ttcagtggtttaccacttcatctaagac 114380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 34822 - 34947
Alignment:
Q  96 agaagtcctaacttaactggtaaatgccgaa-ttacaaggtcagacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggttt-aattt 192  Q
    |||||||||| || |||||| |||||||||| || ||||| | |||||||||||  |||||||||  | ||||||| |||||||||||| |||| |||||    
T  34822 agaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgacatgggttcgaatccaggacctcgcagttgtatgtgagttttaattt 34921  T
Q  193 cagtgaattaccactttatctaagac 218  Q
    ||||| |||||||||| |||||||||    
T  34922 cagtggattaccacttcatctaagac 34947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 22210 - 22291
Alignment:
Q  138 gacgtcgtgacc-gggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||| |||||||| | ||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||||    
T  22210 gacgtcgtgacccgggttcgagcccgggacctcacagttgcgtgtgagtttaatttcagtggattaccacttcatctaagac 22291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 9012 - 8943
Alignment:
Q  149 cgggttcgaacacgggacctcacagttgtatgtgggtttaatttcagtgaattaccactttatctaagac 218  Q
    |||||||||||   ||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||    
T  9012 cgggttcgaacctaggacctcacagttgtgtgtgagtttaatttcagtgatttaccacttcatctaagac 8943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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