View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_1 (Length: 997)
Name: NF4126_low_1
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 37500722 - 37500402
Alignment:
| Q |
18 |
acaatttgggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaattgtgnnnnnnngtctgctaggtaaa |
117 |
Q |
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| T |
37500722 |
acaatttaggtttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaattgtgtttttttgtctgctaggtaaa |
37500623 |
T |
|
| Q |
118 |
gctaattgatctgttaattgtgtttgtctctgagatccttatcaacaaacacgttgtttctcaactcaaatcattaagtctcatcctctgccacaaaagc |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37500622 |
gctagttgatctgttaattgtgtttgtctctgagatccttatcaacaaacacgttgtttctcaactcaaatcattaagtctcatcccctgccacaaaagc |
37500523 |
T |
|
| Q |
218 |
tatgtatttatacacttcaaactcgtataacatacatttaataagagaaatgatttgaagtaactaatcttgtgaaattaactcacaattgaatagcatt |
317 |
Q |
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| T |
37500522 |
tatgtatttatacacttcaaactcgtacaacatacatttaataagagaaataatttgaagtaactaatcttgtgaaattaactcataattgaataacatt |
37500423 |
T |
|
| Q |
318 |
tacatcaatagtcagcatctg |
338 |
Q |
| |
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|| ||||||||||||| |||| |
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| T |
37500422 |
tatatcaatagtcagcgtctg |
37500402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 722 - 988
Target Start/End: Complemental strand, 37498861 - 37498594
Alignment:
| Q |
722 |
tattcattatcacaaaaagttttgggtttacaatattttagaattgtgccaccaacctaagacaatattttattatttgtcttgatatttgaagataaaa |
821 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498861 |
tattcattatcacaaaaagctttgggtttacaatattttagaattgtgccaccaacctaagacaatattttattatttgtcttgatatttgaagataaaa |
37498762 |
T |
|
| Q |
822 |
gtcacatgtcacgtatgagaacaaacactacacggattagccatatcttggtgtcaaacatgtgtcaatgtctaacaccgacgcgataccaacacatatg |
921 |
Q |
| |
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||||||||||||||||||| |||||| |||| || ||||||||| |||| |||||||||||||||| |||| | |||||||||||| ||||||||||||| |
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| T |
37498761 |
gtcacatgtcacgtatgagcacaaacgctactcgaattagccatgtctttgtgtcaaacatgtgtcgatgtttgacaccgacgcgacaccaacacatatg |
37498662 |
T |
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| Q |
922 |
attatactaaattgtgtcatt-ttttcatattattttaaatgttgatatgtcaatgtttgtgtctgtg |
988 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
37498661 |
attatactaaattgtgtcatttttttcatattattttcaatgttgatgtgtcaatgtttgtgtctgtg |
37498594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 401 - 606
Target Start/End: Complemental strand, 37499344 - 37499139
Alignment:
| Q |
401 |
aagattaagatgttgtcagcaacttaaattcatatggtaatattccttgctnnnnnnnn-ttatgcatatatctcttgaaattcatacaacatgaagcac |
499 |
Q |
| |
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||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
37499344 |
aagattaagatgttgtc-gcaacttaaatccatttggtaatattccttgctaaaaaaaagttatgtatatatctcttgaaattcatacaacatgaagcac |
37499246 |
T |
|
| Q |
500 |
ataacataaataaatgaaagtaactaaacttaaataaacttgtagttaacatagttataacaactattttcatctatatgtaattgctaactacatcaga |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
37499245 |
ataacataaataaatgaaagtaactaaacttaaataaacttgtagttaacatagttataacaactactttcgtctatatgtaattgctaactacatcaga |
37499146 |
T |
|
| Q |
600 |
tatgtct |
606 |
Q |
| |
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||||||| |
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|
| T |
37499145 |
tatgtct |
37499139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 649 - 730
Target Start/End: Complemental strand, 37499138 - 37499057
Alignment:
| Q |
649 |
tcttctaagtaaagctagttgcacctagtccttatcaacaaacacattttctcaactcaaatccattacactatattcatta |
730 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
37499138 |
tcttctaagtaaagctagttgcacctagtccttatcaacaaacacattttctcaactcaaatccattagattatatttatta |
37499057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 37498067 - 37497763
Alignment:
| Q |
29 |
ttcatattcatccattgattgtgtttgatctgtcctttaactaaagctagttgtatcttctaattgtgnnnnnnngtctgctaggtaaagctaattgatc |
128 |
Q |
| |
|
||||| |||||||||||| || |||| |||| || |||||||||||| || || || |||| |||||| ||||||||||||| |||| ||||| |
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| T |
37498067 |
ttcatcttcatccattgactgcgtttcatctttcttttaactaaagccagctgcattttctgattgtgattgtatgtctgctaggtaa-gctagttgata |
37497969 |
T |
|
| Q |
129 |
tgttaattgtgtt--tgtctctgagatccttatcaacaaacacgttgtttctcaactcaaatcattaagtctcatcctctgccacaaaa-gctatgtat- |
224 |
Q |
| |
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|| |||||| || ||||||| || ||||||||||| ||||| || ||| ||||||||||||||||||| |||||| ||||||||||| ||||||||| |
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| T |
37497968 |
tgctaattgcgtcactgtctct-ag-tccttatcaaccaacacattttttatcaactcaaatcattaagtttcatcccctgccacaaaaagctatgtatg |
37497871 |
T |
|
| Q |
225 |
---ttatacacttcaaactcgtataacatacatttaataagagaaatgatttgaagtaactaatcttgtgaaattaactcacaattgaatagcatttaca |
321 |
Q |
| |
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|||||||||| |||||| | |||| ||||| ||||||||||| |||| |||| || || ||||||||| ||| ||| |||||||||||||| | |
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| T |
37497870 |
tatttatacactttaaactcatgcaacaaacattagataagagaaataatttaaagtgaccaaccttgtgaaactaattcattattgaatagcatttgta |
37497771 |
T |
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| Q |
322 |
tcaatagt |
329 |
Q |
| |
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|||||||| |
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| T |
37497770 |
tcaatagt |
37497763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 572 - 813
Target Start/End: Complemental strand, 37497506 - 37497266
Alignment:
| Q |
572 |
tctatatgtaattgctaactacatcagatatgtctattagctaaggctagttaaatatactacctacatcggatatgtcttctaagtaaagctagttgca |
671 |
Q |
| |
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||||| || ||||| |||||||| ||||||||||||||| |||||||||||| || ||||| ||| | | |||||||| | |||||||| || | || |
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| T |
37497506 |
tctatctgcaattgataactacaccagatatgtctattaactaaggctagttgcatctactaactataccatatatgtctgccaagtaaagttaactcca |
37497407 |
T |
|
| Q |
672 |
cctagtccttatcaacaaacacattttctcaactcaaatccattacactatattcattatcacaaaaagttttgggtttac-aatattttag-aattgtg |
769 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||||| | | |||| || ||||| | || || |||||||| |||||||||| ||||||| |
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| T |
37497406 |
cctagtccttatcaacaa--atgttttcttaactcaaatccattagatttgattccttgtcacagagagcttagggtttacaaatattttagcaattgtg |
37497309 |
T |
|
| Q |
770 |
ccaccaacctaagacaatattttattatttgtcttgatatttga |
813 |
Q |
| |
|
|||||||||||| | |||||||| | ||||| ||||||||||| |
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| T |
37497308 |
ccaccaacctaa-agaatatttttctgtttgttttgatatttga |
37497266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 37500349 - 37500295
Alignment:
| Q |
347 |
atttgcatcatatatgtctgctaactaatgtctatgtccagtcctaatcaactaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37500349 |
atttgcatcatatatgtctgctaactaatgtctatgtccaatcctaatcaactaa |
37500295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 37504485 - 37504355
Alignment:
| Q |
174 |
tttctcaactcaaatc-attaagtctcatcctctgccaca-aaagctatgtatttatacacttcaaactcgtataacatacatttaataagagaaatgat |
271 |
Q |
| |
|
|||||||||||||||| |||| || ||||| |||||||| |||||||||||||||||||||| || ||| | |||||||||| || ||| |||| || |
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| T |
37504485 |
tttctcaactcaaatccattatgttccatcccctgccacataaagctatgtatttatacactttaagctcatgcaacatacattagattagaaaaataat |
37504386 |
T |
|
| Q |
272 |
ttgaagtaactaatcttgtgaaattaactca |
302 |
Q |
| |
|
|| || ||||||| ||| |||||||| |||| |
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|
| T |
37504385 |
ttaaattaactaaccttatgaaattatctca |
37504355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 419 - 533
Target Start/End: Complemental strand, 37497658 - 37497543
Alignment:
| Q |
419 |
gcaacttaaattcatatggtaatattccttgctnnnnnnnnttatgcatatat-ctcttgaaattcatacaacatgaagcacataacataaataaatgaa |
517 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |||||||||||| | ||| | |||||||||||||||| |||||||||||||||||| |
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|
| T |
37497658 |
gcaacttaaatcaatttggttatattccttgctagaaaaagttatgcatatatacacttcagattcatacaacatgaattggataacataaataaatgaa |
37497559 |
T |
|
| Q |
518 |
agtaactaaacttaaa |
533 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
37497558 |
aataactaaacttaaa |
37497543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 918 - 957
Target Start/End: Complemental strand, 13427622 - 13427583
Alignment:
| Q |
918 |
tatgattatactaaattgtgtcattttttcatattatttt |
957 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |
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| T |
13427622 |
tatgattatactaaattatgtcattttttcaaattatttt |
13427583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 890 - 944
Target Start/End: Complemental strand, 43368153 - 43368099
Alignment:
| Q |
890 |
tgtctaacaccgacgcgataccaacacatatgattatactaaattgtgtcatttt |
944 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
43368153 |
tgtctgacaccgacacgacaccaacacatatgatcatattaaactgtgtcatttt |
43368099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 901 - 946
Target Start/End: Original strand, 2648537 - 2648582
Alignment:
| Q |
901 |
gacgcgataccaacacatatgattatactaaattgtgtcatttttt |
946 |
Q |
| |
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||||||| ||||||||||||||||| | |||||| ||||||||||| |
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| T |
2648537 |
gacgcgacaccaacacatatgattacattaaattttgtcatttttt |
2648582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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