View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_10 (Length: 393)
Name: NF4126_low_10
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 2931058 - 2930694
Alignment:
| Q |
11 |
cagagatctaagagtgaagaaaaggaaaaatttggtgaattagaatccgttaccaaagaagaaaacggagatgaaaaacaggggaaaacagaggaaaatg |
110 |
Q |
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| T |
2931058 |
cagagatctaagagtgaagaaaaggaaaaatttggtgaattagaatccgttaccaatgaagaaaacagagatgaaaaacaggggaaaacagaggaaaatg |
2930959 |
T |
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| Q |
111 |
attctcttgaccaaatttacaagtgggtctcgagaaattatgaagaaaagttgaaatcaaaaatgggttttgaatcaaattcgtttcttgatgagtcttt |
210 |
Q |
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| T |
2930958 |
attctcttgaccaaatttacaagtgggtctcgagaaattatgaagaaaagttgaaatcaaaaatgggttttgaatcaaattcgtttcttgatgagtcttt |
2930859 |
T |
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| Q |
211 |
tgttgaatggaacgtgaaagcaccattggaggttatatatgaagatgaagaaacagaggatattatttctaatgagaattgtgttgctggaattttgaga |
310 |
Q |
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| T |
2930858 |
tgttgaatggaacgtgaaagcaccattggatgttatatatgaagatgaagaaacagaggatattatttctaatgagaattgtgttgctggaattttgaga |
2930759 |
T |
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| Q |
311 |
cactcttcactgtcacgttattatcctgagtctgattcggatagttcttcggagaatgagtttcc |
375 |
Q |
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| T |
2930758 |
cactcttcactgtcacgttattatcctgagtctgattcggatagttcttcggagaatgagtttcc |
2930694 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 36117417 - 36117471
Alignment:
| Q |
321 |
tgtcacgttattatcctgagtctgattcggatagttcttcggagaatgagtttcc |
375 |
Q |
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| T |
36117417 |
tgtcacgttactatccggaatctgattcggatagctcctcggaggatgagtttcc |
36117471 |
T |
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