View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4126_low_14 (Length: 316)

Name: NF4126_low_14
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4126_low_14
NF4126_low_14
[»] chr4 (2 HSPs)
chr4 (66-299)||(54291690-54291923)
chr4 (258-291)||(11962157-11962190)
[»] chr1 (12 HSPs)
chr1 (191-248)||(40670513-40670572)
chr1 (214-267)||(19950335-19950388)
chr1 (258-291)||(8089772-8089805)
chr1 (258-291)||(10582827-10582860)
chr1 (258-291)||(10584033-10584066)
chr1 (258-291)||(36346593-36346626)
chr1 (258-291)||(49122255-49122288)
chr1 (258-291)||(49123389-49123422)
chr1 (261-291)||(3815249-3815279)
chr1 (205-259)||(30038048-30038102)
chr1 (258-291)||(8788586-8788619)
chr1 (258-291)||(49122066-49122099)
[»] scaffold0026 (2 HSPs)
scaffold0026 (258-291)||(79648-79681)
scaffold0026 (262-291)||(80844-80873)
[»] scaffold0018 (1 HSPs)
scaffold0018 (258-291)||(177916-177949)
[»] scaffold0011 (2 HSPs)
scaffold0011 (258-291)||(205642-205675)
scaffold0011 (258-291)||(211719-211752)
[»] chr8 (2 HSPs)
chr8 (258-291)||(21661208-21661241)
chr8 (258-291)||(40254530-40254563)
[»] chr7 (3 HSPs)
chr7 (258-291)||(6081328-6081361)
chr7 (258-291)||(6082535-6082568)
chr7 (258-291)||(17901186-17901219)
[»] chr6 (5 HSPs)
chr6 (258-291)||(7033390-7033423)
chr6 (258-291)||(18133041-18133074)
chr6 (258-291)||(21535835-21535868)
chr6 (258-291)||(4303067-4303100)
chr6 (258-287)||(18131835-18131864)
[»] chr5 (8 HSPs)
chr5 (258-291)||(19139398-19139431)
chr5 (258-291)||(22950390-22950423)
chr5 (258-291)||(39701641-39701674)
chr5 (258-291)||(39702871-39702904)
chr5 (259-291)||(35144554-35144586)
chr5 (258-288)||(29527304-29527334)
chr5 (258-291)||(19934683-19934716)
chr5 (258-291)||(29526091-29526124)
[»] chr3 (8 HSPs)
chr3 (258-291)||(7197843-7197876)
chr3 (258-291)||(54994736-54994769)
chr3 (258-291)||(592628-592661)
chr3 (258-291)||(2386353-2386386)
chr3 (262-291)||(40976916-40976945)
chr3 (258-291)||(45826205-45826238)
chr3 (258-291)||(48637591-48637624)
chr3 (258-291)||(51274513-51274546)
[»] chr2 (3 HSPs)
chr2 (258-291)||(33790006-33790039)
chr2 (258-291)||(12324980-12325013)
chr2 (188-257)||(11963101-11963172)
[»] scaffold0227 (2 HSPs)
scaffold0227 (258-287)||(11207-11236)
scaffold0227 (258-291)||(12351-12384)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 54291923 - 54291690
Alignment:
Q  66 aaatctctttagccttgagaggtgagacatcacaatcctcaaatcataggagtctgatatctgttttagtgtgcttgagcatgatgcaaccatatttctt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54291923 aaatctctttagccttgagaggtgagacatcacaatcctcaaatcataggagtctgatatctgttttagtgtgcttgagcatgatgcaaccatatttctt 54291824  T
Q  166 ctattcccaacagactgttataatagaaactggtatcaaatagagatttaatagtaataatttacttttattgttgatagaattggattacacaagaaat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54291823 ctattcccaacagactgttataatagaaactggtatcaaatagagatttaatagtaataatttacttttattgttgatagaattggattacacaagaaat 54291724  T
Q  266 tcgagagtcttggttctctcccctcccaaataac 299  Q
    ||||||||||||||||||||||||||||||||||    
T  54291723 tcgagagtcttggttctctcccctcccaaataac 54291690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 11962190 - 11962157
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  11962190 caagaaattcgagagtcttggttctctcccctcc 11962157  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 40670513 - 40670572
Alignment:
Q  191 gaaactggtatcaaa--tagagatttaatagtaataatttacttttattgttgatagaat 248  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  40670513 gaaactggtaccaaacatagagatttaatagtaataatttacttttattgttgacagaat 40670572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 19950335 - 19950388
Alignment:
Q  214 taatagtaataatttacttttattgttgatagaattggattacacaagaaattc 267  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  19950335 taataataataattgacttttattgttgatagaataggattacacaataaattc 19950388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 8089772 - 8089805
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  8089772 caagaaattcgagagtcttggttctctcccctcc 8089805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 10582860 - 10582827
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  10582860 caagaaattcgagagtcttggttctctcccctcc 10582827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 10584066 - 10584033
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  10584066 caagaaattcgagagtcttggttctctcccctcc 10584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 36346593 - 36346626
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  36346593 caagaaattcgagagtcttggttctctcccctcc 36346626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 49122288 - 49122255
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  49122288 caagaaattcgagagtcttggttctctcccctcc 49122255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 49123422 - 49123389
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  49123422 caagaaattcgagagtcttggttctctcccctcc 49123389  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 3815279 - 3815249
Alignment:
Q  261 gaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||||||||||||||||||||||||    
T  3815279 gaaattcgagagtcttggttctctcccctcc 3815249  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 30038048 - 30038102
Alignment:
Q  205 atagagatttaatagtaataatttacttttattgttgatagaattggattacaca 259  Q
    ||||||||| ||||||||||||| |||||||||  ||||||| | ||||||||||    
T  30038048 atagagattaaatagtaataattgacttttattaatgatagagtaggattacaca 30038102  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 8788586 - 8788619
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  8788586 caagaaattagagagtcttggttctctcccctcc 8788619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 49122099 - 49122066
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  49122099 caagaaatttgagagtcttggttctctcccctcc 49122066  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 79681 - 79648
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  79681 caagaaattcgagagtcttggttctctcccctcc 79648  T

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Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Complemental strand, 80873 - 80844
Alignment:
Q  262 aaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||    
T  80873 aaattcgagagtcttggttctctcccctcc 80844  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 177916 - 177949
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  177916 caagaaattcgagagtcttggttctctcccctcc 177949  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 205642 - 205675
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  205642 caagaaattcgagagtcttggttctctcccctcc 205675  T

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Target: scaffold0011; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 211719 - 211752
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  211719 caagaaattcgagagtcttggttctctcccctcc 211752  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 21661241 - 21661208
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  21661241 caagaaattcgagagtcttggttctctcccctcc 21661208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 40254563 - 40254530
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  40254563 caagaaattcgagagtcttggttctctcccctcc 40254530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 6081361 - 6081328
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  6081361 caagaaattcgagagtcttggttctctcccctcc 6081328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 6082568 - 6082535
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  6082568 caagaaattcgagagtcttggttctctcccctcc 6082535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 17901219 - 17901186
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||||||||||||||| |||||||||||    
T  17901219 caagaaattcgagagtcttggtactctcccctcc 17901186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 7033390 - 7033423
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  7033390 caagaaattcgagagtcttggttctctcccctcc 7033423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 18133041 - 18133074
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  18133041 caagaaattcgagagtcttggttctctcccctcc 18133074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 21535868 - 21535835
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  21535868 caagaaattcgagagtcttggttctctcccctcc 21535835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 4303100 - 4303067
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||| |||||||||||||||||||||||    
T  4303100 caagaaattctagagtcttggttctctcccctcc 4303067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 18131835 - 18131864
Alignment:
Q  258 caagaaattcgagagtcttggttctctccc 287  Q
    ||||||||||||||||||||||||||||||    
T  18131835 caagaaattcgagagtcttggttctctccc 18131864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 19139431 - 19139398
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  19139431 caagaaattcgagagtcttggttctctcccctcc 19139398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 22950423 - 22950390
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  22950423 caagaaattcgagagtcttggttctctcccctcc 22950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 39701641 - 39701674
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  39701641 caagaaattcgagagtcttggttctctcccctcc 39701674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 39702871 - 39702904
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  39702871 caagaaattcgagagtcttggttctctcccctcc 39702904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 35144554 - 35144586
Alignment:
Q  259 aagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||||||||||||||||||||||||||    
T  35144554 aagaaattcgagagtcttggttctctcccctcc 35144586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 29527304 - 29527334
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccc 288  Q
    |||||||||||||||||||||||||||||||    
T  29527304 caagaaattcgagagtcttggttctctcccc 29527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 19934716 - 19934683
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||| |||||||||||||||||||||||    
T  19934716 caagaaattcaagagtcttggttctctcccctcc 19934683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 29526091 - 29526124
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||| |||||||||||||||||||||||||    
T  29526091 caagaaatccgagagtcttggttctctcccctcc 29526124  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 7197876 - 7197843
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  7197876 caagaaattcgagagtcttggttctctcccctcc 7197843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 54994769 - 54994736
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  54994769 caagaaattcgagagtcttggttctctcccctcc 54994736  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 592661 - 592628
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  592661 caagaaattcgagggtcttggttctctcccctcc 592628  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 2386353 - 2386386
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||||||||||| |||||||||||||||    
T  2386353 caagaaattcgagagtctcggttctctcccctcc 2386386  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Complemental strand, 40976945 - 40976916
Alignment:
Q  262 aaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||    
T  40976945 aaattcgagagtcttggttctctcccctcc 40976916  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 45826205 - 45826238
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  45826205 caagaaattagagagtcttggttctctcccctcc 45826238  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 48637591 - 48637624
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  48637591 caagaaatttgagagtcttggttctctcccctcc 48637624  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 51274546 - 51274513
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||||||||||||||||||||||||| |||||||    
T  51274546 caagaaattcgagagtcttggttctcccccctcc 51274513  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 33790039 - 33790006
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  33790039 caagaaattcgagagtcttggttctctcccctcc 33790006  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 12325013 - 12324980
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    |||| |||||||||||||||||||||||||||||    
T  12325013 caaggaattcgagagtcttggttctctcccctcc 12324980  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 11963172 - 11963101
Alignment:
Q  188 atagaaactggtatcaaat--agagatttaatagtaataatttacttttattgttgatagaattggattaca 257  Q
    ||||||||||||| ||||   ||| ||||||||||||| ||| |||||||||| || |||||| ||||||||    
T  11963172 atagaaactggtaccaaaccaagaaatttaatagtaattattgacttttattgatggtagaataggattaca 11963101  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Complemental strand, 11236 - 11207
Alignment:
Q  258 caagaaattcgagagtcttggttctctccc 287  Q
    ||||||||||||||||||||||||||||||    
T  11236 caagaaattcgagagtcttggttctctccc 11207  T

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Target: scaffold0227; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 12384 - 12351
Alignment:
Q  258 caagaaattcgagagtcttggttctctcccctcc 291  Q
    ||||||||| ||||||||||||||||||||||||    
T  12384 caagaaattagagagtcttggttctctcccctcc 12351  T

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