View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4126_low_15 (Length: 293)

Name: NF4126_low_15
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4126_low_15
NF4126_low_15
[»] chr7 (1 HSPs)
chr7 (1-283)||(44500129-44500411)
[»] chr4 (3 HSPs)
chr4 (1-212)||(3979404-3979617)
chr4 (186-280)||(3981637-3981731)
chr4 (142-229)||(36590329-36590416)
[»] chr5 (3 HSPs)
chr5 (76-238)||(7975719-7975881)
chr5 (114-210)||(38141026-38141122)
chr5 (142-201)||(7895933-7895992)
[»] chr3 (4 HSPs)
chr3 (133-283)||(45909973-45910123)
chr3 (100-208)||(45880802-45880910)
chr3 (155-214)||(20993635-20993694)
chr3 (100-208)||(45855761-45855869)
[»] chr6 (2 HSPs)
chr6 (114-195)||(33843079-33843157)
chr6 (156-195)||(33839163-33839202)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 44500411 - 44500129
Alignment:
Q  1 ttgcataacttggagtcgctgaaagtgaaaatggaagaaattttataaattttgcataaccctgagggatgcaaagttacagaaagccaagtcacagaga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44500411 ttgcttaacttggagtcgctgaaagtgaaaatggaagaaattttataaattttgcataaccctgaaggatgcaaagttacagaaagccaagtcacagaga 44500312  T
Q  101 gaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattgg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44500311 gaagctgcaaggatacgaaaagcacttaaagaaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattgg 44500212  T
Q  201 cagaagttgacttcatcgatcgctcaaggcgacctctttaagagagatatttataatcggtttgtttattgttcccttctctg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44500211 cagaagttgacttcatcgatcgctcaaggcgacctctttaagagagatatttataatcggtttgtttcttgttcccttctctg 44500129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3979404 - 3979617
Alignment:
Q  1 ttgcataacttggagtcgctgaaagtgaaaatggaagaaattttataa--attttgcataaccctgagggatgcaaagttacagaaagccaagtcacaga 98  Q
    |||||||||||| ||||  ||||||||| |||||||||| |||| ||   |||| |||| || || ||||||   ||||||||||| ||||| ||| |||    
T  3979404 ttgcataacttgaagtcattgaaagtgagaatggaagaacttttgtatggatttcgcatgacactaagggatatcaagttacagaacgccaaatcaaaga 3979503  T
Q  99 gagaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccatt 198  Q
    |||||||||| ||||||||||||||| |||||| ||| |||  |||| ||||||| ||||||||| |||||||||||||||||  |||||||||||| ||    
T  3979504 gagaagctgctaggatacgaaaagcatttaaagaagggttggaaccaccttcacccgtacctgatggaatagtggacttcttgtgtcaaaattcaccctt 3979603  T
Q  199 ggcagaagttgact 212  Q
    || |||||||||||    
T  3979604 ggtagaagttgact 3979617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 3981637 - 3981731
Alignment:
Q  186 aaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctttaagagagatatttataatcggtttgtttattgttcccttct 280  Q
    |||||||| | ||| |||||||||||| ||| ||| ||  ||||||||||| | |||||||||||||||||| ||||||||| ||||| ||||||    
T  3981637 aaaattcatcgttgacagaagttgactacatagattgcaaaaggcgacctcatgaagagagatatttataattggtttgttttttgtttccttct 3981731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 36590416 - 36590329
Alignment:
Q  142 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaagg 229  Q
    ||||||||||||  |||||||| ||||||||||||| ||| ||||||| ||||| |  |||||||||||| |||| ||| ||||||||    
T  36590416 accatcttcacccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaagg 36590329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 7975881 - 7975719
Alignment:
Q  76 gttacagaaagccaagtcacagagagaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggac 175  Q
    ||||||||||  ||||||| ||| ||||||||| | | ||||||||||| ||| ||  ||||||| |||||||||||   |||||||| |||||||||||    
T  7975881 gttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatagtggac 7975782  T
Q  176 ttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctt 238  Q
    |||||||||||||||||||| | |||| ||||||||| ||| |||  |||||| | |||||||    
T  7975781 ttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaagtctacctctt 7975719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 38141122 - 38141026
Alignment:
Q  114 tacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttga 210  Q
    |||||||| || ||||||| ||||||  ||||||| ||||  |||||||| ||||||||||||||||| |||||||||| || ||||| || |||||    
T  38141122 tacgaaaatcatttaaagctggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattctcctttggctgatgttga 38141026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 7895933 - 7895992
Alignment:
Q  142 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggc 201  Q
    ||||||| ||||  |||||||| |||||||||| |||||||||||||||||||| |||||    
T  7895933 accatctgcacccatacctgatggaatagtggatttcttgcttcaaaattcacccttggc 7895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 283
Target Start/End: Complemental strand, 45910123 - 45909973
Alignment:
Q  133 aggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcga 232  Q
    |||||||  |||||||||||   |||||||| ||||| ||||||||||||||| |||||| ||||  ||||||||||| ||| | ||| |||||| || |    
T  45910123 aggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaa 45910024  T
Q  233 cctctttaagagagatatttataatcggtttgtttattgttcccttctctg 283  Q
     ||||| |||  ||| ||||||||| ||||||||| | ||| |||||||||    
T  45910023 actcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 45909973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 45880910 - 45880802
Alignment:
Q  100 agaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattg 199  Q
    ||||||||||| | || ||||| |  ||||||||||||||  ||||||| ||||  |||||||| ||||| |  ||||||||||||||||||| |||| |    
T  45880910 agaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacctgatggaataattaacttcttgcttcaaaattcgccatcg 45880811  T
Q  200 gcagaagtt 208  Q
    ||| |||||    
T  45880810 gcacaagtt 45880802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 20993694 - 20993635
Alignment:
Q  155 gtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttc 214  Q
    ||||||||| | |||||||||||||||| ||||||||| || | ||||||||||||||||    
T  20993694 gtacctgatgggatagtggacttcttgcgtcaaaattcgccctcggcagaagttgacttc 20993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 45855869 - 45855761
Alignment:
Q  100 agaagctgcaaggatacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattg 199  Q
    ||||||||||| | || ||||| |  ||||||||||||||  ||||||| ||||  |||| ||| ||||| |  ||||||||||||||||||| |||| |    
T  45855869 agaagctgcaaagttaagaaaatcgtttaaagcaggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcg 45855770  T
Q  200 gcagaagtt 208  Q
    ||| |||||    
T  45855769 gcacaagtt 45855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 33843157 - 33843079
Alignment:
Q  114 tacgaaaagcacttaaagcaggattgagaccatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcacc 195  Q
    ||||||||||| ||||||| || ||| ||||| ||||    ||||||||| ||||||||||||||||||||||||| |||||    
T  33843157 tacgaaaagcatttaaagcgggtttgcgaccaccttcc---gtacctgatggaatagtggacttcttgcttcaaaactcacc 33843079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 33839202 - 33839163
Alignment:
Q  156 tacctgatagaatagtggacttcttgcttcaaaattcacc 195  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  33839202 tacctgatggaatagtggacttcttgcttcaaaactcacc 33839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University