View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_16 (Length: 284)
Name: NF4126_low_16
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 23471294 - 23471558
Alignment:
| Q |
1 |
aaatatgttatcatattgaagaatataaatcttactatacaacagaaatactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatct |
100 |
Q |
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| T |
23471294 |
aaatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatct |
23471393 |
T |
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| Q |
101 |
gtctgttttctctttcagcattattttgacttatcagcattattgatctatagaccaacttgacatgtattttgttctgcatttgacatgtttcccgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23471394 |
gtctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaac |
23471493 |
T |
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| Q |
201 |
atccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactgga |
265 |
Q |
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| T |
23471494 |
atccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactgga |
23471558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 23435808 - 23436072
Alignment:
| Q |
1 |
aaatatgttatcatattgaagaatataaatcttactatacaacagaaatactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatct |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23435808 |
aaatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatat |
23435907 |
T |
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| Q |
101 |
gtctgttttctctttcagcattattttgacttatcagcattattgatctatagaccaacttgacatgtattttgttctgcatttgacatgtttcccgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23435908 |
gtctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaac |
23436007 |
T |
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| Q |
201 |
atccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactgga |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23436008 |
atccatgcaggtgtgttccttggggtatcttcaaacacgcaataccaggtcatcaatggactgga |
23436072 |
T |
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