View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_17 (Length: 258)
Name: NF4126_low_17
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 22790312 - 22790558
Alignment:
| Q |
1 |
aatgcacactgtgaagatattgaaatcaaggatggtgctacaattttcacatgagatattcttaacatctaattttatannnnnnnng--aatttagaat |
98 |
Q |
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| T |
22790312 |
aatgcacactgtgaagatattgaaatcaagggttgtgctacaattttcacatgagatattcttaacatctaattttatatatttttttttaatttagaat |
22790411 |
T |
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| Q |
99 |
gcaccacatgatttttaataatgcatgttgagaattatatggtcatat--gttatattttgtattactgtattgttataaatgttttgatgctttatatg |
196 |
Q |
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| T |
22790412 |
gcaccacatgatttttaataatgcatgttgaaaattatatggacatatatgttatattaagtattactgtattgttataaatgttttgatgctttatatg |
22790511 |
T |
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| Q |
197 |
ttgaataatgttttgtgtatgctcatatacttaaggcttattctttt |
243 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22790512 |
ttgaataatgttttgtgtgtgctcatatacttaaggcttattctttt |
22790558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 22817010 - 22817159
Alignment:
| Q |
95 |
gaatgcaccacatgatttttaataatgcatgttgagaattatatggtcatatgttatattttgtattactgtattgttataaatgttttgatgctttata |
194 |
Q |
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||||||||||||||||||| ||||||||||||||||||| || | ||||||||| ||| ||||||||| ||||||||| | |||| |||||||||||| |
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| T |
22817010 |
gaatgcaccacatgattttcaataatgcatgttgagaatctaattgccatatgttaaattatgtattactatattgttatgattgttgtgatgctttata |
22817109 |
T |
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| Q |
195 |
tgttgaataatgttttgtgtatgctcatatacttaa-ggcttattctttt |
243 |
Q |
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|||||| | |||||||||| | |||| ||||||| ||||||||||||| |
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| T |
22817110 |
tgttgattcatgttttgtgattattcatctacttaatggcttattctttt |
22817159 |
T |
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