View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4126_low_18 (Length: 256)

Name: NF4126_low_18
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4126_low_18
NF4126_low_18
[»] chr4 (3 HSPs)
chr4 (61-147)||(1159299-1159385)
chr4 (13-65)||(1159213-1159268)
chr4 (192-243)||(1159407-1159461)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 1159299 - 1159385
Alignment:
Q  61 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159299 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 1159385  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 1159213 - 1159268
Alignment:
Q  13 ttataatactcatataga---gaaaaagctgtaatgtttctttcagttgccaaaaa 65  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  1159213 ttataatactcatatagatcagaaaaagctgtaatgtttctttcagttgccaaaaa 1159268  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 1159407 - 1159461
Alignment:
Q  192 tcccaagaaaatgacattattattttt---tggttaggaaaatgacatttgctct 243  Q
    |||||||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  1159407 tcccaagaaaatgacattattattattatttggttaggaaaatgacatttgctct 1159461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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