View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4126_low_2 (Length: 828)

Name: NF4126_low_2
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4126_low_2
NF4126_low_2
[»] chr8 (5 HSPs)
chr8 (243-317)||(8844106-8844180)
chr8 (365-423)||(8843936-8843994)
chr8 (93-137)||(6001245-6001289)
chr8 (381-423)||(18684420-18684462)
chr8 (381-423)||(18729985-18730027)
[»] chr7 (6 HSPs)
chr7 (662-818)||(1866029-1866188)
chr7 (81-137)||(11295570-11295626)
chr7 (585-768)||(1905114-1905300)
chr7 (179-281)||(29525419-29525523)
chr7 (381-423)||(29525215-29525257)
chr7 (555-610)||(1850814-1850869)
[»] chr3 (3 HSPs)
chr3 (381-423)||(264299-264341)
chr3 (179-281)||(264030-264134)
chr3 (81-139)||(19826612-19826669)
[»] chr4 (2 HSPs)
chr4 (179-281)||(24195898-24196002)
chr4 (381-423)||(24195691-24195733)
[»] chr1 (2 HSPs)
chr1 (381-423)||(48518526-48518568)
chr1 (381-423)||(5217267-5217309)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 8844180 - 8844106
Alignment:
Q  243 gttgaagatgtttttagacatgatttaatttgtcaattggtggtaactgtagactattgtaaggttaggtgttga 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||  | || ||||||||||||||| |||||    
T  8844180 gttgaagatgtttttagacatgatttaatttgtcaattgatggtaacaattgagtattgtaaggttaggcgttga 8844106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 8843994 - 8843936
Alignment:
Q  365 aaaagaaggaaatcataatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||  |||| |||||||    
T  8843994 aaaagagggaaatcataatcttaattaatattgtgtaaatgattaagtagacgagatca 8843936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 6001289 - 6001245
Alignment:
Q  93 gtagttaagtaagccacaaatatccctaaagaaatcaaccttcaa 137  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||    
T  6001289 gtagttaggtaaaccacaactatccctaaagaaatcaaccttcaa 6001245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 18684462 - 18684420
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||||||||||||||||||  ||||||||| ||||||||||||    
T  18684462 aatcataattaatattgtgaaaatgattaggtagatgagatca 18684420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 18730027 - 18729985
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||||||||||||||||||  ||||||||| ||||||||||||    
T  18730027 aatcataattaatattgtgaaaatgattaggtagatgagatca 18729985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 662 - 818
Target Start/End: Original strand, 1866029 - 1866188
Alignment:
Q  662 gagtacaaaattataacttcatggtacataaaattggaaaaagaaaagagaaaa-tacaat-atttggtgcatgcattaaaaaccaatgacaactcctcg 759  Q
    ||||||||||| || | ||||  || |||||||||  |||||||||| |||||| |||||| ||| ||||||||||  |||| | ||||||| |||||||    
T  1866029 gagtacaaaatcatgatttcaaagtccataaaatttcaaaaagaaaaaagaaaaatacaattattcggtgcatgcacaaaaaccaaatgacagctcctcg 1866128  T
Q  760 aatattctatca-aaagtataatctacgattattttgttagatcagaaactcattcatct 818  Q
    ||||||| |  | |||||||||||| | ||||||||| |||| |||||||||||||||||    
T  1866129 aatattccagtataaagtataatctgcaattattttgctagagcagaaactcattcatct 1866188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 11295570 - 11295626
Alignment:
Q  81 ttatggaaatccgtagttaagtaagccacaaatatccctaaagaaatcaaccttcaa 137  Q
    ||||||||||| ||||||| |||| |||||  |||||||||||||||||||||||||    
T  11295570 ttatggaaatctgtagttaggtaaaccacatctatccctaaagaaatcaaccttcaa 11295626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 585 - 768
Target Start/End: Complemental strand, 1905300 - 1905114
Alignment:
Q  585 cgtcaaatatactagataaggatacatcataaatgaaacaattttccgccttattgcattttgttgccaacatctttgagtacaaaattataacttcatg 684  Q
    |||| ||| ||| ||||||||| |||  |||||| |||| ||||   |||||||| |||||| |||||| |||||| ||||||||||| |||| || |||    
T  1905300 cgtccaatttacgagataaggagacactataaatcaaactatttaatgccttatttcattttattgccatcatcttagagtacaaaatcataattttatg 1905201  T
Q  685 gtacataaaatt--ggaaaaagaaaagagaaaatacaa-tatttggtgcatgcattaaaaaccaatgacaactcctcgaatattcta 768  Q
     | || || |||  | |||||||||| | | ||||||| |||||||||||||||| ||||   ||||| |||||| ||| |||||||    
T  1905200 atccacaacattaggaaaaaagaaaaaaaataatacaattatttggtgcatgcataaaaactaaatgagaactccgcgagtattcta 1905114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 29525523 - 29525419
Alignment:
Q  179 tttgtatatttctatcttgaagttgaaaagccatagatttaattttgttagaca--nnnnnnnnnngttgaagatgtttttagacatgatttaatttgtc 276  Q
    |||||||||||| ||| ||||||||||  | |||||||||||||||||||||||            |||||||||||||||||||||||||||| ||||     
T  29525523 tttgtatatttcaatcgtgaagttgaattgtcatagatttaattttgttagacattttttttctttgttgaagatgtttttagacatgatttaacttgtg 29525424  T
Q  277 aattg 281  Q
    |||||    
T  29525423 aattg 29525419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 29525257 - 29525215
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  29525257 aatcgtaattaatattgtgtgaatgattaggtagatgagatca 29525215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 610
Target Start/End: Original strand, 1850814 - 1850869
Alignment:
Q  555 atatatctgaaatttaggccatgttgatttcgtcaaatatactagataaggataca 610  Q
    |||||| ||||||| |||||||||||||  |||| ||||||| |||||||||||||    
T  1850814 atatatatgaaattcaggccatgttgataccgtctaatatacgagataaggataca 1850869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 264299 - 264341
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  264299 aatcataattaatattgtgtgaatgattaggtagatgagatca 264341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 264030 - 264134
Alignment:
Q  179 tttgtatatttctatcttgaagttgaaaagccatagatttaattttgttagaca--nnnnnnnnnngttgaagatgtttttagacatgatttaatttgtc 276  Q
    |||||||||||| ||| ||||||||||  | |||||||||||||||||||||||            |||||||||||||||||||||||||||| ||||     
T  264030 tttgtatatttcaatcgtgaagttgaattgtcatagatttaattttgttagacattttttttctttgttgaagatgtttttagacatgatttaacttgtg 264129  T
Q  277 aattg 281  Q
    |||||    
T  264130 aattg 264134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 19826612 - 19826669
Alignment:
Q  81 ttatggaaatccgtagttaagtaagccacaaatatccctaaagaaatcaaccttcaaat 139  Q
    ||||||||||| ||||||| |||| |||||  ||||| |||||||||||||||||||||    
T  19826612 ttatggaaatctgtagttaggtaaaccacatctatcc-taaagaaatcaaccttcaaat 19826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 24196002 - 24195898
Alignment:
Q  179 tttgtatatttctatcttgaagttgaaaagccatagatttaattttgttagaca--nnnnnnnnnngttgaagatgtttttagacatgatttaatttgtc 276  Q
    |||||||||||| ||| ||||||||||  | |||||||||||||||||||||||            |||||||||||||||||||||||||||| ||||     
T  24196002 tttgtatatttcaatcgtgaagttgaattgtcatagatttaattttgttagacattttttttctttgttgaagatgtttttagacatgatttaacttgtg 24195903  T
Q  277 aattg 281  Q
    |||||    
T  24195902 aattg 24195898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 24195733 - 24195691
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  24195733 aatcgtaattaatattgtgtgaatgattaggtagatgagatca 24195691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 48518526 - 48518568
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  48518526 aatcgtaattaatattgtgtgaatgattaggtagatgagatca 48518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 5217267 - 5217309
Alignment:
Q  381 aatcataattaatattgtgtgaatgattagttagatgagatca 423  Q
    |||||||||||||||||||  ||||||||| ||||||||||||    
T  5217267 aatcataattaatattgtgaaaatgattaggtagatgagatca 5217309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University