View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4126_low_20 (Length: 253)
Name: NF4126_low_20
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 49271388 - 49271614
Alignment:
| Q |
20 |
ctggaagatatggaaaaaggtttgtcaaagaaagacaaa-gagggagaggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgtt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271388 |
ctggaagatatggaaaaaggtttgtcaaagaaagacaaaagagggagaggatggttcaggcatatcatggggtgtgtttgttcaagaggtagaagatgtt |
49271487 |
T |
|
| Q |
119 |
ggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaagttgctcttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49271488 |
ggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaacttgctcttt |
49271587 |
T |
|
| Q |
219 |
ctaccacagctattgctatctctctct |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49271588 |
ctaccacagctattgctatctctctct |
49271614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 49254728 - 49254949
Alignment:
| Q |
27 |
atatggaaaaaggtttgtcaaagaaagacaaagagggagaggatggttcagg---catatcatggggtgtgtttgttcaagaggtagaagatgttggttt |
123 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||| | ||||||| | |||| |||||||||| ||| |||||||||| |||||||| |||| |
|
|
| T |
49254728 |
atatggaaaaaggtttgttagagaaagacagagagggtgc---tggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttt |
49254824 |
T |
|
| Q |
124 |
tctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaagttgctctttctacc |
223 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
|
|
| T |
49254825 |
tctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagc |
49254924 |
T |
|
| Q |
224 |
acagctattgctatctctctctgtg |
248 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
49254925 |
acagctattgctatctctctctgtg |
49254949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 49274761 - 49274640
Alignment:
| Q |
114 |
atgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaagttgc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
|
| Q |
214 |
tctttctaccacagctattgct |
235 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
49274661 |
tctttctagcacagctattgct |
49274640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 248
Target Start/End: Original strand, 49267041 - 49267211
Alignment:
| Q |
78 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
177 |
Q |
| |
|
||||| |||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
49267041 |
gcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattat |
49267140 |
T |
|
| Q |
178 |
ttcaatgatgatggttggtcatttgggtaaagttgctctttctaccacagctattgctatctctctctgtg |
248 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49267141 |
ttcaatgataatggttggtcgtttgggtaaacttgctctttctagcacagctattgctatctctctctgtg |
49267211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University