View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4126_low_22 (Length: 250)
Name: NF4126_low_22
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49274441 - 49274202
Alignment:
| Q |
1 |
ttataaaaaatctccaaacatgtcttttgctagttagtttaatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacatt |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49274441 |
ttataaaaaatctccaaacattttttttgctagttagtttaatcatgaatgtgtactatgtttatcagttctccacaagattacaaacagaaaacacatt |
49274342 |
T |
|
| Q |
101 |
catagatgttttgaagtttcaatacatttaaggaccataatgacaccacctctcacattaagggaccaatagattgtttactcattatttacatcaaatc |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
49274341 |
cgcagatgttttgaagtttcaatacatttaaggatcataatgacaccatctctcacattaagggaccaataggttgtttactcattatttgcatcaaatc |
49274242 |
T |
|
| Q |
201 |
ataatgaaattaattctttttattttatacatatcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49274241 |
ataatgaaattaattctttttattttatacatatcctatg |
49274202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University