View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_4 (Length: 742)
Name: NF4126_low_4
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 114 - 733
Target Start/End: Complemental strand, 30707428 - 30706821
Alignment:
| Q |
114 |
ttaatcatttgattgtgtgagtagcagtaaattgggaaactccttctagatacgtatacataacagtaaattaatgcatctagacgtagttaagtcgtga |
213 |
Q |
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| T |
30707428 |
ttaatcatttgattgtgtgagtaacaataaattgggaaactccttctagatatgtatacataacagtaaattaat-catctaaatgtagttaagtcgtga |
30707330 |
T |
|
| Q |
214 |
ttccaacatacgtatgcataacagtaaattaatttaggaattaagtcatatccacatcgtagtctaagaaattatgatttacatgttattaaaacttcgt |
313 |
Q |
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| T |
30707329 |
ttccaacatacgtatgcataacagtaaattaatttaggaattaagtcatatccacatcgtagtctaagaaattatgatttacatgttattgaaattccgt |
30707230 |
T |
|
| Q |
314 |
ctctagaacttaaagagctcnnnnnnnatgatatttcagacatttggatattttagaatgttcgtttaatagctcaattcttattttcttgaactctgcc |
413 |
Q |
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| T |
30707229 |
ccagagaatttaaagggctctttttt-atgatattttaggcatttggatgttttagaatgttcgtttaatagctcagttcttattttcttggactctgcc |
30707131 |
T |
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| Q |
414 |
ctcttcttacaacnnnnnnnnnnnnnccttaatcttatctcata---taaggtgtgtgtttggttgtgcgcgagaaattcttctctctctaacctcttct |
510 |
Q |
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| T |
30707130 |
ctcttcttacaaaagaaaat-------cttaatcttatcttatactattaagtgtgtgtttggttgtgtgcgagaaatacctctctctctaac---ttct |
30707041 |
T |
|
| Q |
511 |
tctcgcccctctctctagnnnnnnnnnnncccttcgctaccctcaaaaccccaaaatccaaactcttctctttcaagatgtagccttttccggtggtggc |
610 |
Q |
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| T |
30707040 |
tctctaccctctctctagaagacaaa---cccttcgctaccttcaaaaccccaaaatccaaactcttctctttcaagatgtagccttcgccggcggtggt |
30706944 |
T |
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| Q |
611 |
gcgacgagaacattggttctccgcaccacctctctccagctcgctgtcgtattccacaaggggcttcggagcggtgggtttagggtggttcactggcgtt |
710 |
Q |
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| T |
30706943 |
gcgacgagaacattggttctccgcaccacctctctccagctcgccgtcgtattccacaaggggcttcggagcggtgggtttagggtggttcactggcgtt |
30706844 |
T |
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| Q |
711 |
ttggttcagatctctctgctgct |
733 |
Q |
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| T |
30706843 |
ttggttcagatctctctgttgct |
30706821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30707692 - 30707575
Alignment:
| Q |
1 |
tctttatactataatttcgttctttgaagttctttagacgggaataactttgaagagattgtaacgctttttgtattgaattgaatagtagctgccgcat |
100 |
Q |
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| T |
30707692 |
tctttatactataactttgttctttgaaattctttagacgagcacaactttgaagagattgtaacgttttttgtattgaattgaatagtagctgccgcat |
30707593 |
T |
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| Q |
101 |
gcctacgatcttgttaat |
118 |
Q |
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|| || |||||||||||| |
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| T |
30707592 |
gcatatgatcttgttaat |
30707575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 553 - 724
Target Start/End: Complemental strand, 5231504 - 5231332
Alignment:
| Q |
553 |
tcaaaaccccaaaatccaaactcttctctttcaagatgtagccttttccggtggtggcgcgacgagaacattggttctccgcaccacctctctccagctc |
652 |
Q |
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|||||| |||||||||||||||||||| ||| | ||||||| || ||| ||||||||||||||||| |||||||| |||||||||||| ||| |||| |
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| T |
5231504 |
tcaaaatcccaaaatccaaactcttctttttta-gatgtagactccgccgacggtggcgcgacgagaacgttggttcttcgcaccacctctttcctgctc |
5231406 |
T |
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| Q |
653 |
gctgtcgtattccacaaggggc--ttcggagcggtgggtttagggtggttcactggcgttttggttcagatctc |
724 |
Q |
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| T |
5231405 |
gccgtcgagttccacaaggggcaattcggagtcgtgggtttaaggtggttcaccggcgttttggttcagatctc |
5231332 |
T |
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