View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_6 (Length: 511)
Name: NF4126_low_6
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 22855418 - 22854942
Alignment:
| Q |
19 |
atgtagagattcaagatattggattgaagctgagaaattttttccagaaaggttcattgatggtgcagttgattataaaggtgtgaattttcagtttata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
22855418 |
atgtagagattcaagatattggattgaagctgagaaattttgtccagaaaggttcattgatggtgcagttgattacaaaggtgtggattttcggtttata |
22855319 |
T |
|
| Q |
119 |
ccatttggtgctgggagaaggacgtgtccgggcatcgcatttggtattgcgaacttggaaatctcgcttgctaatttgcttttccattttgattggaaga |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22855318 |
ccatttggtgctgggagaaggatgtgtccgggcatcgcatttggtattgcgaacttggaaatctcgcttgcgaatttgcttttccattttgattggaaga |
22855219 |
T |
|
| Q |
219 |
tgcctaatggttgtaaggctgatgaacttgacatggatgaatcatttgggttggctgttagaagaaaacatgatttatggttggttcctagtgcttatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
22855218 |
tgcctaatggttgtaaggctgatgaacttgacatggatgaatcatttgggttggctgttagaagaaaacatgatttatggttggttcctactacttatca |
22855119 |
T |
|
| Q |
319 |
tccctaaaattaagacctaagaaaataatgtaagtgaaaaatttatagtagtgttaatgttctttgttaagtgtgtgatttaatggtagaaactcttatg |
418 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22855118 |
tccctaagattaagacctaagaaaataatgtaagtgaaaaatttatagtagtgttaatgttctttgttaag--tgtgatttaatggtagaaactcttatg |
22855021 |
T |
|
| Q |
419 |
ttcactccttgtgaattaagaaagctattaaaatatggatgttaattaatgtaataaatttcaattctgcccattgatg |
497 |
Q |
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| T |
22855020 |
ttcactccttgtgaattaagaaagctattaaaatatggattttaattaatgtaataaatttcaattctgcccattgatg |
22854942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 22904130 - 22904430
Alignment:
| Q |
19 |
atgtagagattcaagatattggattgaagctgagaaattttttccagaaaggttcattgatggtgcagttgattataaaggtgtgaattttcagtttata |
118 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| ||| || |||||||||| ||||||||| |||||||||||||| |
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| T |
22904130 |
atgtagagattcaagatattggattgaggcggagaaattttttcctgaaagattcatcgatagttcagttgattacaaaggtgtggattttcagtttata |
22904229 |
T |
|
| Q |
119 |
ccatttggtgctgggagaaggacgtgtccgggcatcgcatttggtattgcgaacttggaaatctcgcttgctaatttgcttttccattttgattggaaga |
218 |
Q |
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|||||||||||||||||||||| |||||| ||||| ||| |||||||| | |||||||||||| ||||| ||||||||||||||||||||||||| || |
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| T |
22904230 |
ccatttggtgctgggagaaggatgtgtcctggcatgacatccggtattgcaagcttggaaatctcacttgcaaatttgcttttccattttgattggagga |
22904329 |
T |
|
| Q |
219 |
tgcctaatggttgtaaggctgatgaacttgacatggatgaatcatttgggttggctgttagaagaaaacatgatttatggttggttcctagtgcttatca |
318 |
Q |
| |
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|||||||||| || |||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
22904330 |
tgcctaatgggaacaacgctgatgacctagacatggatgaatcctttggattggctgttagaagaaaacatgatttacggttggttcctactgcttatca |
22904429 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
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|
| T |
22904430 |
t |
22904430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 22906414 - 22906125
Alignment:
| Q |
19 |
atgtagagattcaagatattggattgaagctgagaaattttttccagaaaggttcattgatggtgcagttgattataaaggtgtgaattttcagtttata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||| ||||| || |||||| || |||||||||| ||||||||| ||||| |||||||| |
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| T |
22906414 |
atgtagagattcaagatattggattgaagcagagaaattttatcctgaaagattaattgattgttcagttgattacaaaggtgtggattttgagtttata |
22906315 |
T |
|
| Q |
119 |
ccatttggtgctgggagaaggacgtgtccgggcatcgcatttggtattgcgaacttggaaatctcgcttgctaatttgcttttccattttgattggaaga |
218 |
Q |
| |
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|||||||||||||||||||||| ||||| || || |||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22906314 |
ccatttggtgctgggagaaggatatgtcctggaataatatttggtattgctaacatagaaatctcgcttgcgaatttgcttttccattttgattggaaga |
22906215 |
T |
|
| Q |
219 |
tgcctaatggttgtaaggctgatgaacttgacatggatgaatcatttgggttggctgttagaagaaaacatgatttatggttggttccta |
308 |
Q |
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|||||||||| || |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
22906214 |
tgcctaatgggaacaatgctgatgaacttgacatgattgaatcttttggtttggctgttagaagaaaacatgatttgtggttggttccta |
22906125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 51 - 294
Target Start/End: Complemental strand, 22919158 - 22918915
Alignment:
| Q |
51 |
agaaattttttccagaaaggttcattgatggtgcagttgattataaaggtgtgaattttcagtttataccatttggtgctgggagaaggacgtgtccggg |
150 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||| | |||||| || |
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|
| T |
22919158 |
agaaattttatccagaaaggttcattgatagctcagttgattacaaaggtgtggattttcagtttattccattcggtgctgggagaagaatgtgtcctgg |
22919059 |
T |
|
| Q |
151 |
catcgcatttggtattgcgaacttggaaatctcgcttgctaatttgcttttccattttgattggaagatgcctaatggttgtaaggctgatgaacttgac |
250 |
Q |
| |
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|| | ||||| ||||| || | ||||||| || || ||||||||||||||||| |||||||| ||| | |||| ||||||||| ||||||||| |
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| T |
22919058 |
aattacgtttggcattgctaatgttgaaatcttactagcaaatttgcttttccatttcgattggaaaatggttgatggaaataaggctgaagaacttgac |
22918959 |
T |
|
| Q |
251 |
atggatgaatcatttgggttggctgttagaagaaaacatgattt |
294 |
Q |
| |
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||| |||||| ||||| ||| | |||||||| ||||||||||| |
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| T |
22918958 |
atgactgaatcgtttggtttgtcggttagaaggaaacatgattt |
22918915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 41305423 - 41305468
Alignment:
| Q |
116 |
ataccatttggtgctgggagaaggacgtgtccgggcatcgcatttg |
161 |
Q |
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||||||||||||||||| || |||| |||||||||||| ||||||| |
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| T |
41305423 |
ataccatttggtgctggaaggaggatgtgtccgggcattgcatttg |
41305468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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