View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_7 (Length: 473)
Name: NF4126_low_7
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 2057425 - 2057659
Alignment:
| Q |
17 |
actacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttacaaatcactttcataaagttcaattccaagattt |
116 |
Q |
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| T |
2057425 |
actacgaatgtgaagtcaaaacataattcatatgtaagtctagtcaacaattgtcaaaccctcttacaaatcactttcataaagttcaattccaagattt |
2057524 |
T |
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| Q |
117 |
catgtccaagttaggagtattcaatgtatatcttccaacttgaaggggagttttaacttcttgctattagatttagttgaaattttgttagaatcattta |
216 |
Q |
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| T |
2057525 |
aatgtccaagttaggagtattcaatgtatatcttccaacttgaaggggagttttaacttcttgctattagatttggttgaagttttgttagaatcatttg |
2057624 |
T |
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| Q |
217 |
cagaactgttatggaagttagctagtcgctattgt |
251 |
Q |
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| T |
2057625 |
cagaactgttatggaagttagctagtcgttattgt |
2057659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 2057706 - 2057832
Alignment:
| Q |
251 |
ttaaactcaagtgttaaacttttaattaaattcataaaaattccaacacttagactgaactctacaattttaaagtttaacacatgaatttaattaaatt |
350 |
Q |
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| T |
2057706 |
ttaaactcaagtgttaaacttttaattaaattcataaaaattccaacacttagactaaactctacaatttaaaagtttaacacatgaatttaattaaatt |
2057805 |
T |
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| Q |
351 |
gaattgaaataattttagatcaataca |
377 |
Q |
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| T |
2057806 |
gaattgaaataattttagatcaataca |
2057832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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