View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4126_low_8 (Length: 413)
Name: NF4126_low_8
Description: NF4126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4126_low_8 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 10824244 - 10824143
Alignment:
| Q |
312 |
gtagtaaattctaatgcaaacctaatacttttagtttccttaacaaacttattttaaaacctttataccttgtaattcctttcttaaaatctacattttc |
411 |
Q |
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| T |
10824244 |
gtagtaaattctaatgcaaacctaatacttttagtttccttcacaaacttattttaaaacctttataccttgtaattcctttcttaaaaactacattttc |
10824145 |
T |
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| Q |
412 |
tt |
413 |
Q |
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|| |
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| T |
10824144 |
tt |
10824143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 10824575 - 10824487
Alignment:
| Q |
14 |
ccaaatttcttatcacttcaacaaatataaatatattattggtt-ttttgaaaaagtttatttgatgatatataacacatcaaatacat |
101 |
Q |
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| T |
10824575 |
ccaaatctcttatcacttcaacaaatataaatatattattggttcttttgaaaaagtttatttgatgatatataacacatcaaatacat |
10824487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 10824386 - 10824317
Alignment:
| Q |
178 |
agcggataataaattctccgatggacaggaaaatgttaaagagtgcttaggacattggttaagagaacat |
247 |
Q |
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| T |
10824386 |
agcggataataaattctccgatggacagggaaatgttaaagagtgcttaggacattggttaagagaacat |
10824317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 7444292 - 7444255
Alignment:
| Q |
321 |
tctaatgcaaacctaatacttttagtttccttaacaaa |
358 |
Q |
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| T |
7444292 |
tctaatgcaaacctactacttttggtttccttaacaaa |
7444255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 48705651 - 48705611
Alignment:
| Q |
315 |
gtaaattctaatgcaaacctaatacttttagtttccttaac |
355 |
Q |
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| T |
48705651 |
gtaatttctaatgcaaaactactacttttagtttccttaac |
48705611 |
T |
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