View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_10 (Length: 350)
Name: NF4127_high_10
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 37258943 - 37258594
Alignment:
| Q |
1 |
acctaacaatacgatccggttacaaatcctatgaagcctacatccaacgtcaactcaacaaaactctcaacacaaaactacgaaaaatatggacaacacg |
100 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258943 |
acctaacaatacgacccggttacaagtcctatgaagcctacatccaacgtcaactcaacaaaactctcaacacaaaactacgaaaaatatggacaacacg |
37258844 |
T |
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| Q |
101 |
cgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaacatccaaagcattatgtattggtgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258843 |
cgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaacatccaaagcattatgtattggtgca |
37258744 |
T |
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| Q |
201 |
cgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccacatccaccgttggtcgtggaaggtgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258743 |
cgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccacatccaccgttggtcgtggaaggtgatt |
37258644 |
T |
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| Q |
301 |
tccataaccaaccgtttggtaacgacacgttcgattttgaattctccaat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37258643 |
tccataaccaaccgtttggtaacgacacgttcgattttgaattctccaat |
37258594 |
T |
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