View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_high_14 (Length: 299)

Name: NF4127_high_14
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_high_14
NF4127_high_14
[»] chr3 (1 HSPs)
chr3 (7-299)||(35059942-35060232)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 35060232 - 35059942
Alignment:
Q  7 attctttgaccttgcttgctgaaaacttgtaggnnnnnnnctgaaacacaaacaaattcaccaaattagactaaagctagaataggcaatcaattatttc 106  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  35060232 attctttgaccttgcttgctgaaaacttgtaggtttttt-ctgaaacacaaacaaattcaccgaattagactaaagctagaataggcaatcaattattac 35060134  T
Q  107 atagacaatagcagacatgctcgaaggnnnnnnnngaaaagggaagaacaaaaagatacttttgcttcaagagattatagattacgatgctaactatttg 206  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060133 atagacaatagcagacatgctcgaaggaaaaaaa-gaaaagggaagaacaaaaagatacttttgcttcaagagattatagattacgatgctaactatttg 35060035  T
Q  207 ttattcatccaatagctttgtccttttgacttactaagtacagtgatttttccaacggatatgattcactagctagaatgactctgtgctgct 299  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  35060034 ttattcatccaatagctttgtccttttgacttactaagtagagtgatttttccaacggatatgattcactagctagaatgactatgtgttgct 35059942  T

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