View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_high_16 (Length: 285)

Name: NF4127_high_16
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_high_16
NF4127_high_16
[»] chr1 (5 HSPs)
chr1 (8-279)||(47619416-47619687)
chr1 (134-205)||(47743701-47743772)
chr1 (134-205)||(47758102-47758173)
chr1 (131-205)||(47627662-47627736)
chr1 (131-204)||(47698603-47698676)
[»] chr6 (12 HSPs)
chr6 (116-212)||(22085898-22085994)
chr6 (116-212)||(21968015-21968111)
chr6 (116-204)||(22001839-22001927)
chr6 (131-210)||(22207066-22207145)
chr6 (131-204)||(18995518-18995591)
chr6 (131-204)||(20235854-20235927)
chr6 (131-204)||(22129838-22129911)
chr6 (116-204)||(20083735-20083823)
chr6 (131-204)||(18979454-18979527)
chr6 (131-199)||(18990806-18990874)
chr6 (131-201)||(20233467-20233537)
chr6 (131-201)||(22127451-22127521)
[»] scaffold0074 (1 HSPs)
scaffold0074 (131-204)||(49868-49941)
[»] scaffold0007 (1 HSPs)
scaffold0007 (131-204)||(7402-7475)
[»] chr5 (2 HSPs)
chr5 (113-212)||(453798-453897)
chr5 (131-204)||(469773-469846)
[»] chr8 (2 HSPs)
chr8 (125-201)||(10401449-10401525)
chr8 (134-205)||(11225256-11225327)
[»] chr2 (2 HSPs)
chr2 (131-207)||(2681818-2681894)
chr2 (179-207)||(2680225-2680253)
[»] chr7 (1 HSPs)
chr7 (134-205)||(20294828-20294899)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 47619687 - 47619416
Alignment:
Q  8 aaatgagaactaagtttaaaaatgctagaaatcacacttacatagctcaagagacctttagcatcatggtttgattcgtaagacttagcattcctttttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47619687 aaatgagaactaagtttaaaaatgctagaaatcacacttacatagctcaagagacctttagcatcatggtttgattcgtaagacttagcattcctttttc 47619588  T
Q  108 cggtgattatctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47619587 cggtgattatctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgta 47619488  T
Q  208 aaaaacaaactacagttagctaaaacacaccacttaaaaagagagaagaacattcaaattgaagaaaaatat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47619487 aaaaacaaactacagttagctaaaacacaccacttaaaaagagagaagaacattcaaattgaagaaaaatat 47619416  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 47743701 - 47743772
Alignment:
Q  134 ccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 205  Q
    |||||||||||||| ||||||||| | || |||| ||||| ||||||||| ||||||| |||||| ||||||    
T  47743701 ccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactg 47743772  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 47758102 - 47758173
Alignment:
Q  134 ccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 205  Q
    |||||||||||||| ||||||||| | || |||| ||||| ||||||||| ||||||| |||||| ||||||    
T  47758102 ccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactg 47758173  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 47627736 - 47627662
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 205  Q
    ||||||||||||||||| || || || || || |||| |||| ||||||||||||| |||||||| |||||||||    
T  47627736 actccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccggagacatgtaaccactg 47627662  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 47698676 - 47698603
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    ||||||||||| |||||||| |||||||| || | || |||| |||||||||||||  |||||||||| |||||    
T  47698676 actccaaaactgaaaacgtccgatttttctgaaagttgtccatgcattgcatattcctgagacatatagccact 47698603  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 22085898 - 22085994
Alignment:
Q  116 atctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaaaa 212  Q
    ||||||| |||||| |||||||||||| |||| |||||||||||||| |||| ||||| |||||||||||| || ||||||||||||||||||||||    
T  22085898 atctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtccaaacattgcatattctggcgacatataaccactgtaaaaaa 22085994  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 21968015 - 21968111
Alignment:
Q  116 atctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaaaa 212  Q
    ||||||| |||||| |||||||||||| |||| |||||||||||||| |||| || || |||||||||||| |||||||||||||||||||| ||||    
T  21968015 atctctaggatcatgactccaaaactataaacatctgatttttcagaaaattgtcaaaacattgcatattctggagacatataaccactgtacaaaa 21968111  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 22001839 - 22001927
Alignment:
Q  116 atctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||||| |||||||||||| |||  |||||||||||||| |||| || || |||||||||||| |||||||||||||||||    
T  22001839 atctctatgatcatgactccaaaactataaatatctgatttttcagaaaattgtctaaacattgcatattctggagacatataaccact 22001927  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 22207145 - 22207066
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaa 210  Q
    |||||||||||| ||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||| ||||    
T  22207145 actccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattctggagacatataaccactgcaaaa 22207066  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 18995518 - 18995591
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| ||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  18995518 actccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 18995591  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 20235854 - 20235927
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| ||| ||| ||||||||||| |||| ||| | |||||||||||| |||||||||||||||||    
T  20235854 actccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccact 20235927  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 22129838 - 22129911
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| ||| ||| ||||||||||| |||| ||| | |||||||||||| |||||||||||||||||    
T  22129838 actccaaaactataaatgtcggatttttcagaaaattgtccgaccattgcatattccggagacatataaccact 22129911  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 20083735 - 20083823
Alignment:
Q  116 atctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||| | ||| |||||||||||| ||| ||| ||||||||||| |||| ||| | |||| ||||||| |||||||||||||||||    
T  20083735 atctctataagcataactccaaaactataaatgtcggatttttcagaaaattgtccgaacattacatattccggagacatataaccact 20083823  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 18979454 - 18979527
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| | | ||| ||||||||||| |||| ||||| |||| ||||||| |||||||||||||||||    
T  18979454 actccaaaactatatatgtcggatttttcagaaaattgtccaaacattacatattccggagacatataaccact 18979527  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 18990806 - 18990874
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataa 199  Q
    |||||||||||| ||| ||| || |||||||| |||| ||||| |||| ||||||| ||||||||||||    
T  18990806 actccaaaactataaatgtcggaattttcagaaaattgtccaaacattacatattccggagacatataa 18990874  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 20233537 - 20233467
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataacc 201  Q
    |||||||||||| |||| || ||||| ||||| ||||  || ||||| |||||||| ||||||||||||||    
T  20233537 actccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 20233467  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 22127521 - 22127451
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataacc 201  Q
    |||||||||||| |||| || ||||| ||||| ||||  || ||||| |||||||| ||||||||||||||    
T  22127521 actccaaaactataaacatcagatttctcagaaaattgcccgagcatcgcatattctggagacatataacc 22127451  T

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Target: scaffold0074 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 49941 - 49868
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| ||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  49941 actccaaaactataaatgtcggatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 49868  T

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Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 7475 - 7402
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    |||||||||||| ||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||    
T  7475 actccaaaactataaatgtcagatttttcagaaaattgtccaagcattgcatattccggagacatataaccact 7402  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 453798 - 453897
Alignment:
Q  113 attatctctatgatcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgtaaaaaa 212  Q
    ||||||||||| || || |||||||| ||||| || ||||||||||| ||  | | |||| ||||||||||||| | |||||||||||||||| ||||||    
T  453798 attatctctataattatcactccaaagctaaacacatctgatttttctgaataatgtccatgcattgcatattcggaagacatataaccactggaaaaaa 453897  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 469773 - 469846
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccact 204  Q
    ||||||||||| || || || ||||| ||||| |||| |||  ||||||||||||| |||||||||||||||||    
T  469773 actccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccact 469846  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 10401449 - 10401525
Alignment:
Q  125 atcattactccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataacc 201  Q
    ||||| |||||||||||| |||| || ||||| || || |||| |||||||||||||||||| ||||| ||||||||    
T  10401449 atcatgactccaaaactataaacatcagatttctccgaaaattgtccaagcattgcatattctggagatatataacc 10401525  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 11225327 - 11225256
Alignment:
Q  134 ccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 205  Q
    |||||||||||||| ||||||||| | || |||| ||||| ||||||||| ||||||| |||||| ||||||    
T  11225327 ccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactg 11225256  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2681818 - 2681894
Alignment:
Q  131 actccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactgta 207  Q
    |||||||| |||||||| ||||||||  | ||||| |||||   ||| |||||||||||||||||||| ||||||||    
T  2681818 actccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacatatagccactgta 2681894  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 2680253 - 2680225
Alignment:
Q  179 gcatattcaggagacatataaccactgta 207  Q
    |||||||||||||||||||||||||||||    
T  2680253 gcatattcaggagacatataaccactgta 2680225  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 20294899 - 20294828
Alignment:
Q  134 ccaaaactaaaaacgtctgatttttcagagaattttccaagcattgcatattcaggagacatataaccactg 205  Q
    ||||| |||||||| |||||||| || || |||  |||  ||||||||||||||||||||||||| ||||||    
T  20294899 ccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactg 20294828  T

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