View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_19 (Length: 256)
Name: NF4127_high_19
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 24895008 - 24894784
Alignment:
| Q |
12 |
atgaaggtcgtggaggagaaggaggaggttgggaagcagcagtacatgaagaaaattttgaaagaggagaaaatgaagaacccggtttggggtgagaaga |
111 |
Q |
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| T |
24895008 |
atgaaggtcgtggaggagaagaaggaggttgggaagcaggagtacatgaagaaaattttgaaagaggagaaaatgaagaacccggtttggggtgagaaga |
24894909 |
T |
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| Q |
112 |
aagaagcagcaaaataaatggtgggtgcttgaagcatccatgaaaatcaaacaaatgtgtgtattttaatttcatgaagtatgaataagaagaaaattgt |
211 |
Q |
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| T |
24894908 |
aagaagcagcaaaataaatggtgggtgcttgaagcatccatgaaaatcaaacaaatgtgtgtatttt-atttcatgaagtatgaataagaagaaaattgt |
24894810 |
T |
|
| Q |
212 |
ttttcccacttcacacaatgctaaga |
237 |
Q |
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| T |
24894809 |
ttttcccacttcacacaatgctaaga |
24894784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 55520939 - 55520972
Alignment:
| Q |
204 |
aaaattgtttttcccacttcacacaatgctaaga |
237 |
Q |
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| T |
55520939 |
aaaattgtttttcccacttcacacaaagctaaga |
55520972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 214734 - 214770
Alignment:
| Q |
201 |
aagaaaattgtttttcccacttcacacaatgctaaga |
237 |
Q |
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| T |
214734 |
aagaaaattgtttttcccacttcatacaatgctaaga |
214770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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