View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4127_high_20 (Length: 253)
Name: NF4127_high_20
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4127_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 51755886 - 51755663
Alignment:
| Q |
18 |
acacgcgctggacaagcatcatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggtaacaattcag |
117 |
Q |
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| T |
51755886 |
acacgcgctggacaagcataatcatgacgaggttccaacacttccagacctaggtgaggtttatcggaggaagtgtcgtgggaaggaggtaacaattcag |
51755787 |
T |
|
| Q |
118 |
gtttaggggttgggatcctccagaagattacggcgagccatgtccataaatggttgaagaaatcgaagctcaagtagttgaaagctagagtgtcaagtgg |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51755786 |
gtttaggggttgggatcctccagaagatgacggcgagccatgtccataaatggttgaagaaatcgaagctcaagtagttgaaagctagagtgtcaagtgg |
51755687 |
T |
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| Q |
218 |
agaattttctgacatgttcatctc |
241 |
Q |
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|||||||||| ||||||||||||| |
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| T |
51755686 |
agaattttctaacatgttcatctc |
51755663 |
T |
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