View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4127_high_21 (Length: 247)

Name: NF4127_high_21
Description: NF4127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4127_high_21
NF4127_high_21
[»] chr6 (2 HSPs)
chr6 (17-239)||(13328887-13329109)
chr6 (166-239)||(1217504-1217581)
[»] chr1 (4 HSPs)
chr1 (114-239)||(25713117-25713242)
chr1 (147-239)||(52964412-52964503)
chr1 (144-239)||(52961307-52961401)
chr1 (145-239)||(18416188-18416280)
[»] chr2 (3 HSPs)
chr2 (108-238)||(30701252-30701382)
chr2 (170-238)||(30701394-30701462)
chr2 (159-239)||(30701463-30701543)
[»] chr8 (2 HSPs)
chr8 (147-239)||(37001067-37001158)
chr8 (167-239)||(36996987-36997056)
[»] chr7 (1 HSPs)
chr7 (144-239)||(37625139-37625233)
[»] chr4 (3 HSPs)
chr4 (145-239)||(33831143-33831235)
chr4 (145-239)||(37920552-37920644)
chr4 (145-239)||(33835078-33835170)
[»] chr5 (2 HSPs)
chr5 (145-239)||(8081382-8081475)
chr5 (163-239)||(30589118-30589194)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 13328887 - 13329109
Alignment:
Q  17 atttcaaagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtaccaactt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328887 atttcaaagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtaccaactt 13328986  T
Q  117 gaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatca 216  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328987 gaataatttaaattgaataactcattcattacaatgacgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatca 13329086  T
Q  217 agcataataagtagagaataatc 239  Q
    |||||||||||||||||||||||    
T  13329087 agcataataagtagagaataatc 13329109  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 1217504 - 1217581
Alignment:
Q  166 tatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagc-----ataataagtagagaataatc 239  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  1217504 tatatacac-agagaatctctcaagaaaacataaataaggaaactaaatcaagcacagtataataagtagagaataatc 1217581  T

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Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 25713242 - 25713117
Alignment:
Q  114 cttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaa 213  Q
    ||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25713242 cttgaataatttagattgaataactctaatattacaatgatgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaag 25713143  T
Q  214 tcaagcataataagtagagaataatc 239  Q
    ||||||||||||||||||||||||||    
T  25713142 tcaagcataataagtagagaataatc 25713117  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 52964503 - 52964412
Alignment:
Q  147 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    |||||||||||  ||  |||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| |||||||| ||||||||||||    
T  52964503 acaatgatgtatacaagcttatatacaagagagaatctctcaataaagca-aaataagaaaactaaatcaaccataataaatagagaataatc 52964412  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 52961401 - 52961307
Alignment:
Q  144 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||||||  || |||||| |||| |||| |||||||||| ||| || ||||||| |||||||||||| |||||||| || |||||||||    
T  52961401 attacaatgatgtatacaaacttatgtacaagagaaaatctctcaataaagca-aaataagcaaactaaatcaaccataataaataaagaataatc 52961307  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 18416188 - 18416280
Alignment:
Q  145 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||||| |||   ||||||||| |||||||| ||||| |||| || |||  | |||||||||||||  ||||||| ||||||||||||    
T  18416188 ttacaatgatgtatgcaagtttatatacaagagagaatatctcatgaaagcaaaaa--acgaaactaaatcaactataataaatagagaataatc 18416280  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 30701252 - 30701382
Alignment:
Q  108 taccaacttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaa 207  Q
    ||||||||||||||||||| ||||||||| |  |  |||||||| ||||  |||| |||| |||||| |||||||||||||||||| |||||||||| ||    
T  30701252 taccaacttgaataatttagattgaataacttgtatattacaataatgtgtgcactcttacatacacaagagaatctctcaagaaagcataaataagaaa 30701351  T
Q  208 actaaatcaagcataataagtagagaataat 238  Q
    ||||||||||||||||||| |||||||||||    
T  30701352 actaaatcaagcataataattagagaataat 30701382  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 30701394 - 30701462
Alignment:
Q  170 tacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataat 238  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30701394 tacacaagataatctctcaagaaagcataaataaggaaactaaatcaagcataataattagagaataat 30701462  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 30701463 - 30701543
Alignment:
Q  159 gcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    |||| |||| |||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  30701463 gcactcttacatacacaagataatctctcaagaaagcataaataaagaaactaaatcaagcataataattagagaataatc 30701543  T

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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 37001158 - 37001067
Alignment:
Q  147 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||| |||  |||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  37001158 acaatgatgtatgcaagcttatatacaagagagaatctctcatgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 37001067  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 36997056 - 36996987
Alignment:
Q  167 atatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    |||||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  36997056 atatacacgagagaatctc--atgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 36996987  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 37625233 - 37625139
Alignment:
Q  144 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    |||||||||||| |  || |||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||| |||| ||||||||||||    
T  37625233 attacaatgatgcatacaaacttatatacacgagagaatatctcaataaaaca-aaataatgaaactaaatcaaccatgataaatagagaataatc 37625139  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 33831235 - 33831143
Alignment:
Q  145 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||||| |||  |||||||||| |||||||| |||||||||| |  ||| ||||||||||||||||  ||||||| ||||||||||||    
T  33831235 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaagaaagc--aaaaaaggaaactaaatcaactataataaatagagaataatc 33831143  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 37920552 - 37920644
Alignment:
Q  145 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| || |||  |||||||||||||||  ||||||| ||||||||||||    
T  37920552 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagcaaaaa--aggaaactaaatcaactataataaatagagaataatc 37920644  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 33835170 - 33835078
Alignment:
Q  145 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| || |||||||||    
T  33835170 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataaagaataatc 33835078  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 8081382 - 8081475
Alignment:
Q  145 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagt-agagaataatc 239  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| | |||||||||||    
T  8081382 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataagagaataatc 8081475  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 30589118 - 30589194
Alignment:
Q  163 acttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 239  Q
    ||||||||||| || |||||||||||||||||   ||| || |||| |||||||| |||| ||| ||||||||||||    
T  30589118 acttatatacaagaaagaatctctcaagaaaaagaaaacaatgaaattaaatcaatcatagtaaatagagaataatc 30589194  T

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